Ecosyste.ms: Issues

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GitHub / Finn-Lab/EukCC issues and pull requests

#41 - Support of compressed bin.fa

Issue - State: open - Opened by KateSakharova over 1 year ago

#40 - metaeuk fails

Issue - State: open - Opened by metalichen over 1 year ago - 1 comment

#39 - How to use conda install eukcc

Issue - State: open - Opened by weiguanyue over 1 year ago - 2 comments

#38 - Unable to download EukCC database

Issue - State: open - Opened by akbyers over 1 year ago

#37 - binlinks.py , IndexError: list index out of range

Issue - State: open - Opened by haihao999 almost 2 years ago - 1 comment

#36 - Could EukCC run offline？

Issue - State: open - Opened by ChenTianYi99 about 2 years ago

#35 - FileNotFoundError: Could not find fasta file

Issue - State: open - Opened by alienn233 about 2 years ago - 1 comment

#34 - Add NCBI TaxID to the eukcc.csv file?

Issue - State: open - Opened by mkellom over 2 years ago

#33 - Provide more information in results regarding bin merging

Issue - State: open - Opened by mgabriell1 over 2 years ago

#31 - ValueError: 13349 taxid not found

Issue - State: closed - Opened by mkellom over 2 years ago - 3 comments

#28 - Example workflow?

Issue - State: open - Opened by jolespin over 2 years ago

#27 - Bin merging with PacBio reads?

Issue - State: open - Opened by mkellom almost 3 years ago - 4 comments

#26 - Bin merging example set

Issue - State: open - Opened by mkellom about 3 years ago - 4 comments

#25 - Unlisted and outdated dependency

Issue - State: open - Opened by smurdock-UVic about 3 years ago - 3 comments

#24 - Eukcc does not work properly after installation

Issue - State: closed - Opened by 389419784 over 3 years ago - 3 comments

#23 - Failed to successfully run test

Issue - State: closed - Opened by robinblonk over 3 years ago - 8 comments

#22 - merge options

Issue - State: closed - Opened by Lcornet over 3 years ago - 1 comment

#21 - Further guidance on GeneMark-ES installation

Issue - State: closed - Opened by mw55309 over 3 years ago - 3 comments

#20 - GeneMark-ES license

Issue - State: open - Opened by Lcornet over 3 years ago - 1 comment

#19 - max_silent_contamination ?

Issue - State: closed - Opened by michoug over 3 years ago - 1 comment

#18 - No profiles to evaluate?

Issue - State: closed - Opened by franciscozorrilla over 3 years ago - 1 comment

#17 - Question: multicellular eukaryotes?

Issue - State: closed - Opened by Ahmed-Shibl over 3 years ago - 2 comments

#16 - Eukcc Failure

Issue - State: closed - Opened by u15412611 almost 4 years ago - 2 comments

#15 - Ability to choose which node to use for completeness estimation

Issue - State: closed - Opened by jamiemcg almost 4 years ago - 4 comments
Labels: enhancement, improvement

#14 - stop codon (*) causes failure

Issue - State: open - Opened by halexand almost 4 years ago - 1 comment
Labels: bug

#13 - IndexError: list index out of range

Issue - State: closed - Opened by gchevignon almost 4 years ago - 3 comments
Labels: bug

#12 - Exit code when no marker gene was found

Issue - State: open - Opened by openpaul about 4 years ago - 1 comment
Labels: improvement

#11 - error script workflow.py: index out of range

Issue - State: closed - Opened by Otavio20 about 4 years ago - 2 comments

#10 - Failure placementReduced.jplace has no placements

Issue - State: closed - Opened by sarah872 about 4 years ago - 5 comments

#9 - Error taxid not found

Issue - State: closed - Opened by sarah872 about 4 years ago - 2 comments

#8 - FileNotFoundError: [Errno 2] No such file or directory: 'hmmsearch'

Issue - State: closed - Opened by openpaul over 4 years ago - 4 comments
Labels: bug, bioconda

#7 - empty/missing file eukcc.tsv

Issue - State: open - Opened by BiodivGenomic over 4 years ago - 1 comment

#6 - Missing bed entry error in protein mode

Issue - State: open - Opened by halexand over 4 years ago - 3 comments
Labels: bug, enhancement

#5 - pip vs pip3 in docs

Issue - State: closed - Opened by hyphaltip over 4 years ago - 1 comment

#4 - git folder checkout is case sensitive

Pull Request - State: closed - Opened by hyphaltip over 4 years ago

#3 - Issues when running eukcc in test genome

Issue - State: closed - Opened by leosouliotis almost 5 years ago - 16 comments
Labels: GeneMark-ES

#2 - eukccdb

Issue - State: closed - Opened by housw almost 5 years ago - 2 comments

#1 - Install issue

Issue - State: closed - Opened by claudiodonati almost 5 years ago - 1 comment