Ecosyste.ms: Issues

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GitHub / FertigLab/pycogaps issues and pull requests

#75 - adata processing issue?

Issue - State: open - Opened by daniel-spies 6 months ago

#73 - boost

Pull Request - State: open - Opened by jeanettejohnson 12 months ago

#72 - Atomic pragma ignored

Issue - State: open - Opened by dimalvovs 12 months ago
Labels: question, core

#71 - Parallel pragma ignored

Issue - State: open - Opened by dimalvovs 12 months ago
Labels: question, core

#70 - Different signedness comparison warning

Issue - State: open - Opened by dimalvovs 12 months ago
Labels: enhancement, core

#69 - Bump setuptools from 56.0.0 to 65.5.1

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#68 - requirements simplified & tested

Pull Request - State: closed - Opened by dimalvovs 12 months ago

#67 - too strict requirements

Issue - State: closed - Opened by dimalvovs 12 months ago

#66 - Distributed fails when nSets > cpu_count() in docker

Issue - State: open - Opened by dimalvovs about 1 year ago - 3 comments
Labels: bug

#65 - Distributed inoperable in Docker Hub version

Issue - State: open - Opened by dimalvovs about 1 year ago - 1 comment
Labels: bug

#64 - make run on pull request build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#63 - cleanup build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#62 - Update build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#61 - Update build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#60 - Update build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#59 - Seed behaviour

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: bug, core

#58 - Update build-test.yml

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#57 - Create build-test.yml.

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#56 - Reduce the size of repository

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: enhancement

#55 - Pass dtype explicitly

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: enhancement, good first issue

#54 - Create new tests

Issue - State: open - Opened by dimalvovs about 1 year ago - 2 comments
Labels: bug, enhancement

#53 - Write run parameters to the results object

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: enhancement

#52 - Bump urllib3 from 2.0.6 to 2.0.7

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#51 - Windows OS setup.py install error

Issue - State: open - Opened by horjuel1 about 1 year ago - 1 comment
Labels: question

#50 - visiumvignette fails

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: bug

#49 - vignette_from_args fails

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: bug

#48 - pdacvignette.py fails

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: bug

#47 - add docker workflow

Issue - State: open - Opened by dimalvovs about 1 year ago - 2 comments
Labels: enhancement

#46 - 45 some c++ libs can not be found

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#45 - some c++ libs can not be found

Issue - State: closed - Opened by dimalvovs about 1 year ago - 3 comments

#44 - add dependencies, fix versions

Pull Request - State: closed - Opened by dimalvovs about 1 year ago

#43 - Is matrix commented out on purpose

Issue - State: open - Opened by dimalvovs about 1 year ago
Labels: question

#42 - Issues with requirements file

Issue - State: closed - Opened by dimalvovs about 1 year ago
Labels: bug

#41 - Run pycogaps in GPU?

Issue - State: open - Opened by Junjie-Hu over 1 year ago
Labels: enhancement

#40 - updated to remove dependencies, bugs

Pull Request - State: closed - Opened by ashtsang almost 3 years ago

#39 - restructured files

Pull Request - State: closed - Opened by ashtsang almost 3 years ago

#38 - config parameter file support

Pull Request - State: closed - Opened by ashtsang almost 3 years ago

#37 - Debug dist result

Pull Request - State: closed - Opened by ashtsang almost 3 years ago

#36 - created wrap function for standard & distributed cogaps

Pull Request - State: closed - Opened by ashtsang about 3 years ago

#35 - Debug dist

Pull Request - State: closed - Opened by ashtsang about 3 years ago

#34 - organized files, added doc strings

Pull Request - State: closed - Opened by ashtsang about 3 years ago

#33 - Distributed CoGAPS

Pull Request - State: closed - Opened by jeanettejohnson about 3 years ago

#32 - Update setup instructions

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#31 - Top level tests

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#30 - fixed params, tsv reading issues

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#29 - fix support for reading hdf files

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#28 - implemented subset data

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#27 - Add user parameters

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#26 - Some anndata compatability

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#25 - Fixing plots to work with AnnData

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#24 - supports .h5 files, retina test data

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#23 - Plot pattern markers

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#22 - implemented calcStats result functions

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#21 - converts all files to anndata, runs cogaps from matrix, returns gapsr…

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#20 - Anndata result

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#19 - Plots

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#18 - Matrix refactor for real

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#17 - implemented patternMarkers helper func

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#16 - fixed matrix bindings

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#15 - Cogaps results helpers

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#14 - Anndata input support

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#13 - PyCoGAPS helper functions

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#12 - Implemented Helper Functions for PyCoGAPS

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#11 - Add python wrapper

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#10 - Fix binding conflicts

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#9 - Create gapsparameters obj

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#8 - Create cogaps bindings

Pull Request - State: closed - Opened by ashtsang over 3 years ago

#7 - Cpp tests python

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#6 - Replace R compatibility in Cogaps.cpp

Issue - State: closed - Opened by ashtsang over 3 years ago

#5 - Create bindings for CoGAPS running functions

Issue - State: closed - Opened by ashtsang over 3 years ago

#4 - Create bindings for CoGAPS get/check functions

Issue - State: closed - Opened by ashtsang over 3 years ago

#3 - Update cogaps module to current master branch

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#2 - Updates to build configuration

Pull Request - State: closed - Opened by jeanettejohnson over 3 years ago

#1 - Clean up interface

Issue - State: closed - Opened by sherman5 about 5 years ago - 1 comment