Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Ferlab-Ste-Justine/datalake-lib issues and pull requests

#139 - feat(spliceai): CLIN-1601 Import spliceai public tables

Pull Request - State: closed - Opened by laurabegin about 2 years ago

#138 - fix: CLIN-1438 use third arg as table name for public imports

Pull Request - State: closed - Opened by MattSyms about 2 years ago

#138 - fix: CLIN-1438 use third arg as table name for public imports

Pull Request - State: closed - Opened by MattSyms about 2 years ago

#137 - feat: Upgrade spark 3.3.1 and delta 2.1.1

Pull Request - State: closed - Opened by jecos over 2 years ago

#137 - feat: Upgrade spark 3.3.1 and delta 2.1.1

Pull Request - State: closed - Opened by jecos over 2 years ago

#136 - feat: CLIN-1555 normalized_refseq_annotation delta

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#136 - feat: CLIN-1555 normalized_refseq_annotation delta

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#135 - feat: CLIN-1504 topmed bravo data import

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#135 - feat: CLIN-1504 topmed bravo data import

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#134 - feat: CLIN-1500 import ensembl

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#134 - feat: CLIN-1500 import ensembl

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#133 - feat: CLIN-1500 - import ensembl

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#133 - feat: CLIN-1500 - import ensembl

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#132 - feat: CLIN-1488 update refseq_annotation raw path

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#131 - feat: CLIN-1478 updated version.sbt

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#131 - feat: CLIN-1478 updated version.sbt

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#130 - feat: Upgrade to Spark 3.3 and delta 1.2

Pull Request - State: open - Opened by jecos over 2 years ago - 1 comment

#130 - feat: Upgrade to Spark 3.3 and delta 1.2

Pull Request - State: closed - Opened by jecos over 2 years ago - 1 comment

#129 - feat: CLIN-1478 cosmic data import

Pull Request - State: closed - Opened by MattSyms over 2 years ago

#128 - feat: Move Spark App to spark3 package

Pull Request - State: closed - Opened by jecos over 2 years ago

#128 - feat: Move Spark App to spark3 package

Pull Request - State: closed - Opened by jecos over 2 years ago

#127 - feat: Add all public databases

Pull Request - State: closed - Opened by jecos over 2 years ago

#127 - feat: Add all public databases

Pull Request - State: closed - Opened by jecos over 2 years ago

#126 - feat: Reference dbsnp

Pull Request - State: closed - Opened by jecos over 2 years ago

#126 - feat: Reference dbsnp

Pull Request - State: closed - Opened by jecos over 2 years ago

#125 - build: Remove aws sdk java v2 dependency

Pull Request - State: closed - Opened by laurabegin over 2 years ago - 1 comment

#125 - build: Remove aws sdk java v2 dependency

Pull Request - State: closed - Opened by laurabegin over 2 years ago - 1 comment

#124 - 3.1.4

Pull Request - State: closed - Opened by jecos over 2 years ago

#124 - 3.1.4

Pull Request - State: closed - Opened by jecos over 2 years ago

#123 - 3.1.3

Pull Request - State: closed - Opened by jecos over 2 years ago

#121 - 3.1.1

Pull Request - State: closed - Opened by jecos over 2 years ago

#121 - 3.1.1

Pull Request - State: closed - Opened by jecos over 2 years ago

#120 - feat: Increment version and simplify public etl

Pull Request - State: closed - Opened by jecos over 2 years ago

#120 - feat: Increment version and simplify public etl

Pull Request - State: closed - Opened by jecos over 2 years ago

#119 - 3.1.0

Pull Request - State: closed - Opened by jecos over 2 years ago

#119 - 3.1.0

Pull Request - State: closed - Opened by jecos over 2 years ago

#118 - fix: Sort within parition, not on the entire dataframe

Pull Request - State: closed - Opened by jecos over 2 years ago

#118 - fix: Sort within parition, not on the entire dataframe

Pull Request - State: closed - Opened by jecos over 2 years ago

#117 - feat: Ad test and utilituy function

Pull Request - State: closed - Opened by jecos over 2 years ago

#117 - feat: Ad test and utilituy function

Pull Request - State: closed - Opened by jecos over 2 years ago

#116 - feat: change version

Pull Request - State: closed - Opened by jecos over 2 years ago

#116 - feat: change version

Pull Request - State: closed - Opened by jecos over 2 years ago

#115 - 3.0.0

Pull Request - State: closed - Opened by jecos over 2 years ago

#115 - 3.0.0

Pull Request - State: closed - Opened by jecos over 2 years ago

#114 - feat: Calculate parental origin based on the type of chromosome (auto…

Pull Request - State: closed - Opened by jecos over 2 years ago

#114 - feat: Calculate parental origin based on the type of chromosome (auto…

Pull Request - State: closed - Opened by jecos over 2 years ago

#113 - Add release.yml

Pull Request - State: open - Opened by botekchristophe over 2 years ago

#113 - Add release.yml

Pull Request - State: open - Opened by botekchristophe over 2 years ago

#112 - feat: Add sortChromosome column

Pull Request - State: closed - Opened by jecos over 2 years ago

#112 - feat: Add sortChromosome column

Pull Request - State: closed - Opened by jecos over 2 years ago

#111 - Add scaladoc in datalake.commons

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#111 - Add scaladoc in datalake.commons

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#110 - Release

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#110 - Release

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#109 - Merged spark31 and spark30 into spark3

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#109 - Merged spark31 and spark30 into spark3

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#108 - feat: UNIC-693 add readCurrent() in DatasetConfImplicits

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#108 - feat: UNIC-693 add readCurrent() in DatasetConfImplicits

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#108 - feat: UNIC-693 add readCurrent() in DatasetConfImplicits

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#107 - fix (HiveSqlBinder.drop): Switch drop and remove calls

Pull Request - State: closed - Opened by laurabegin over 2 years ago

#107 - fix (HiveSqlBinder.drop): Switch drop and remove calls

Pull Request - State: closed - Opened by laurabegin over 2 years ago

#107 - fix (HiveSqlBinder.drop): Switch drop and remove calls

Pull Request - State: closed - Opened by laurabegin over 2 years ago

#105 - Refactored spar30 and spark31 into spark3

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#105 - Refactored spar30 and spark31 into spark3

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#104 - Feat/928 load es template from resources or spark

Pull Request - State: closed - Opened by creativeyann17 over 2 years ago

#103 - feat: CLIN-1107 Update transmission algorithm

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#102 - fix: Rename parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#102 - fix: Rename parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#102 - fix: Rename parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#101 - Add parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#101 - Add parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#101 - Add parent gq columns

Pull Request - State: closed - Opened by jecos over 2 years ago

#100 - fix: CLIN-1034 zygosity for WT hemizygous

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#100 - fix: CLIN-1034 zygosity for WT hemizygous

Pull Request - State: closed - Opened by botekchristophe over 2 years ago

#98 - Added support for hemizygous in zygosity

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#98 - Added support for hemizygous in zygosity

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#98 - Added support for hemizygous in zygosity

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#97 - Add default repartition

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#97 - Add default repartition

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#96 - feat: CLIN-943 - add getAlias in ESCLient

Pull Request - State: closed - Opened by creativeyann17 almost 3 years ago

#96 - feat: CLIN-943 - add getAlias in ESCLient

Pull Request - State: closed - Opened by creativeyann17 almost 3 years ago

#96 - feat: CLIN-943 - add getAlias in ESCLient

Pull Request - State: closed - Opened by creativeyann17 almost 3 years ago

#95 - Add tests and correct genotype transmission function

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#95 - Add tests and correct genotype transmission function

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#95 - Add tests and correct genotype transmission function

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#94 - Add tests and correct sexual genotype transmission function

Pull Request - State: closed - Opened by kstonge almost 3 years ago

#94 - Add tests and correct sexual genotype transmission function

Pull Request - State: closed - Opened by kstonge almost 3 years ago

#94 - Add tests and correct sexual genotype transmission function

Pull Request - State: closed - Opened by kstonge almost 3 years ago

#93 - UNIC-190 add Coalesce transformation

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#93 - UNIC-190 add Coalesce transformation

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#93 - UNIC-190 add Coalesce transformation

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago

#92 - Add tests and correct genotype transmission function

Pull Request - State: closed - Opened by kstonge almost 3 years ago

#91 - Added support for null values in HashTransformation

Pull Request - State: closed - Opened by botekchristophe almost 3 years ago