Ecosyste.ms: Issues

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GitHub / FelixTheStudent/cellpypes issues and pull requests

#23 - Prepare for upcoming Seurat v5 release

Issue - State: open - Opened by Gesmira about 1 year ago

#22 - Revert "Allow NA expr"

Pull Request - State: closed - Opened by FelixTheStudent almost 2 years ago

#21 - Allow NA expr

Pull Request - State: closed - Opened by FelixTheStudent almost 2 years ago

#20 - Backtrace which cells that got classified?

Issue - State: closed - Opened by RolantusdataExp over 2 years ago - 5 comments

#19 - threshold in rule function

Issue - State: open - Opened by min0609 over 2 years ago - 5 comments

#18 - cellpypes does not handle objects processed with SoupX

Issue - State: closed - Opened by kaizen89 over 2 years ago - 1 comment

#17 - pype_from_seurat only works on simple cases

Issue - State: closed - Opened by FelixTheStudent over 2 years ago - 1 comment

#16 - Existing labels

Issue - State: open - Opened by FelixTheStudent over 2 years ago - 1 comment

#15 - plot_last: make plots the same size

Issue - State: closed - Opened by FelixTheStudent over 2 years ago - 1 comment

#14 - plot_classes/classify: Handle overlap between parent and child

Issue - State: closed - Opened by FelixTheStudent almost 3 years ago - 1 comment

#13 - parent invalid gives unclear error message

Issue - State: open - Opened by FelixTheStudent almost 3 years ago

#12 - dot_plot function

Issue - State: open - Opened by FelixTheStudent almost 3 years ago

#11 - plot_last function

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 1 comment

#10 - precompute function

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 2 comments

#9 - format_rules function

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 1 comment

#8 - Function: group_classes (OR logic for rules)

Issue - State: open - Opened by FelixTheStudent over 3 years ago - 4 comments

#7 - Function to combine objects

Issue - State: open - Opened by FelixTheStudent over 3 years ago

#6 - plot_overlap function

Issue - State: open - Opened by FelixTheStudent over 3 years ago

#5 - class_factor function and class_matrix function

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 1 comment

#4 - options function for cellpypes

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 1 comment

#3 - pype_from_seurat function

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 3 comments

#2 - Genes in rows (not columns)

Issue - State: closed - Opened by FelixTheStudent over 3 years ago - 1 comment

#1 - embedding instead of embed

Issue - State: open - Opened by FelixTheStudent over 3 years ago