Ecosyste.ms: Issues

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GitHub / FelixErnst/RNAmodR issues and pull requests

#28 - Replace GenomicFeatures::makeTxDbFromGFF with txdbmaker::makeTxDbFromGFF

Pull Request - State: closed - Opened by hpages 11 months ago - 1 comment

#27 - Stats

Pull Request - State: closed - Opened by FelixErnst almost 5 years ago

#26 - change class definitions containing DataFrame to DFrame

Issue - State: closed - Opened by FelixErnst over 5 years ago

#25 - Dev

Pull Request - State: closed - Opened by FelixErnst almost 6 years ago

#24 - bugfix for subsetting with flanking

Pull Request - State: closed - Opened by FelixErnst almost 6 years ago

#23 - bugfix for subsetting with flanking

Pull Request - State: closed - Opened by FelixErnst almost 6 years ago

#22 - add output of basic stats

Issue - State: open - Opened by FelixErnst about 6 years ago

#21 - add wig/bigWig import/export

Issue - State: closed - Opened by FelixErnst about 6 years ago - 1 comment
Labels: enhancement

#20 - Seqdata construction

Pull Request - State: closed - Opened by FelixErnst about 6 years ago

#19 - Add constructor for SequenceData accepting a GAlignment(List) as input

Issue - State: closed - Opened by FelixErnst about 6 years ago - 1 comment

#18 - Inosine

Pull Request - State: closed - Opened by FelixErnst about 6 years ago

#17 - Refactoring

Pull Request - State: closed - Opened by FelixErnst about 6 years ago

#16 - add RiboMethSeq feature

Issue - State: closed - Opened by FelixErnst about 7 years ago
Labels: enhancement

#15 - add coverage and fpkm output to plotting functions

Issue - State: closed - Opened by FelixErnst about 7 years ago
Labels: enhancement

#14 - bugfix

Pull Request - State: closed - Opened by FelixErnst about 7 years ago

#13 - Restructuring

Pull Request - State: closed - Opened by FelixErnst about 7 years ago

#12 - add aggregator function for known modified position

Issue - State: closed - Opened by FelixErnst about 7 years ago
Labels: enhancement

#11 - add local to global conversion feature for gff files

Issue - State: closed - Opened by FelixErnst about 7 years ago
Labels: enhancement

#10 - pull request to work with current prep functions

Pull Request - State: closed - Opened by FelixErnst about 7 years ago

#9 - Detect all modifications at the same time

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: bug

#8 - Add modomics export function

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: enhancement

#7 - m7G v2 detection promoted to master

Pull Request - State: closed - Opened by FelixErnst about 7 years ago

#6 - add genome/annotation modification function

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment

#5 - add basic gene modification visualization

Issue - State: closed - Opened by FelixErnst about 7 years ago
Labels: enhancement

#4 - add heatmap comparison

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: enhancement

#3 - add comparison of samples

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: enhancement

#2 - add m3C detection

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: enhancement

#1 - add D detection

Issue - State: closed - Opened by FelixErnst about 7 years ago - 1 comment
Labels: enhancement