Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / FZJ-INM1-BDA/siibra-python issues and pull requests
#600 - Building mask from Julich parent node fails
Issue -
State: open - Opened by dickscheid about 1 month ago
- 1 comment
#599 - Downstream issues after obtaining empty gene expression features
Issue -
State: open - Opened by dickscheid about 2 months ago
Labels: bug
#598 - Fix: get_region(spec) exact match if spec is a region key
Pull Request -
State: open - Opened by AhmetNSimsek 3 months ago
#597 - Environment variables are not casted to correct type
Issue -
State: closed - Opened by ch-schiffer 3 months ago
#596 - Default fetch() for probability maps fails
Issue -
State: closed - Opened by dickscheid 3 months ago
- 1 comment
Labels: bug
#595 - Querying BigBrainIntesityProfiles with locations does not work as the intersection of locations do not return indices
Issue -
State: open - Opened by AhmetNSimsek 4 months ago
Labels: bug
#594 - refactor: use attributes
Pull Request -
State: open - Opened by xgui3783 5 months ago
- 4 comments
#593 - CI: Mirror workflow is failing
Issue -
State: open - Opened by AhmetNSimsek 5 months ago
Labels: bug
#592 - Test examples as a part of e2e. Create docs on push/PR to main and on publish
Pull Request -
State: closed - Opened by AhmetNSimsek 5 months ago
- 1 comment
#591 - Fix boundingbox transformation
Pull Request -
State: open - Opened by dickscheid 5 months ago
- 1 comment
#590 - test: fast ci if regular branch, full suite if PR to main
Pull Request -
State: closed - Opened by xgui3783 5 months ago
#589 - fix: memory usage when warming the cache
Pull Request -
State: closed - Opened by xgui3783 5 months ago
- 2 comments
#588 - fix: add assertion error message
Pull Request -
State: closed - Opened by xgui3783 6 months ago
#587 - fix: python closure is weird
Pull Request -
State: closed - Opened by xgui3783 6 months ago
#586 - TypeError: RegionalTimeseriesActivity.__init__() got an unexpected keyword argument 'files'
Issue -
State: closed - Opened by xgui3783 6 months ago
- 6 comments
#585 - Test: add cron job to test tutorials regularly
Pull Request -
State: closed - Opened by AhmetNSimsek 6 months ago
- 1 comment
#584 - Doc: use book theme for docs and general maint
Pull Request -
State: open - Opened by AhmetNSimsek 6 months ago
- 1 comment
Labels: documentation
#583 - Use precalculated bounding boxes of image-features to speed up image feature query
Pull Request -
State: open - Opened by AhmetNSimsek 6 months ago
Labels: enhancement
#582 - feat: update how related regions are fetched
Pull Request -
State: closed - Opened by xgui3783 7 months ago
- 7 comments
#581 - [maint] `Factory.from_json` overwrites `filename` attribute, if exists
Issue -
State: open - Opened by xgui3783 7 months ago
Labels: maintenance
#580 - [schema] inconsistent map type
Issue -
State: open - Opened by xgui3783 7 months ago
Labels: maintenance
#579 - New: experimental module, with draft classes for cortical patch sampling
Pull Request -
State: closed - Opened by dickscheid 7 months ago
- 1 comment
#578 - use datasets of the spaces if templates don't have any specified
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 1 comment
#577 - fix: pointset intersection with boundingbox fails if no points inside
Pull Request -
State: closed - Opened by dickscheid 7 months ago
- 1 comment
#576 - fix: allen gene exp query w a list of genes
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 1 comment
#575 - Read freesurfer .annot files as fsaverage mesh labels
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
Labels: enhancement
#574 - Fix: fetch specific label from gii labels
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 2 comments
Labels: bug
#573 - Documentation for architecture decision records
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 2 comments
#572 - Use `nilearn.resample_to_img` for merging fragments
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 1 comment
#571 - urls -> doi_or_url and returns a list of string
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
#570 - Print versions in version validation and fix bug
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
#569 - Proper treatment of "hybrid" anatomical anchors
Issue -
State: open - Opened by dickscheid 7 months ago
Labels: enhancement
#568 - Reformat `feature.name` and reintorudce `data` and `plot()` for `CompoundFeature`s
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 5 comments
Labels: important, urgent, maintenance
#567 - Exclude background from connected_components
Pull Request -
State: closed - Opened by dickscheid 7 months ago
- 2 comments
#566 - Add Volume.evaluate_points() and fix voxel access for _points_inside
Pull Request -
State: closed - Opened by dickscheid 7 months ago
- 2 comments
#565 - fix: volume._pointsinside resample img to template
Pull Request -
State: closed - Opened by AhmetNSimsek 7 months ago
- 2 comments
#564 - `get_region("6ma")` returns "posterior medial superior frontal gyrus" instead
Issue -
State: open - Opened by xgui3783 7 months ago
- 2 comments
Labels: user feedback
#563 - fix: write lock for warmup
Pull Request -
State: closed - Opened by xgui3783 7 months ago
- 2 comments
#562 - Maint: `volume.fetch`
Pull Request -
State: closed - Opened by AhmetNSimsek 8 months ago
- 1 comment
Labels: maintenance
#561 - Introduce merging Neuroglancer fragments
Pull Request -
State: closed - Opened by AhmetNSimsek 8 months ago
- 1 comment
Labels: bug, enhancement
#560 - During merging of PR #480, some changes on provider submodules were lost
Issue -
State: open - Opened by AhmetNSimsek 8 months ago
Labels: maintenance
#559 - feat: add encode URL point
Pull Request -
State: closed - Opened by xgui3783 8 months ago
- 1 comment
#558 - Valid behaviors for points with None space
Issue -
State: open - Opened by dickscheid 8 months ago
- 2 comments
Labels: enhancement
#557 - Mesh fetching fails for some combinations
Issue -
State: closed - Opened by dickscheid 8 months ago
- 7 comments
#556 - Showing live messages to users
Issue -
State: open - Opened by AhmetNSimsek 8 months ago
Labels: enhancement
#555 - Removal of EBRAINS access token
Issue -
State: closed - Opened by romina1601 8 months ago
- 2 comments
#554 - Feat map to zip
Pull Request -
State: open - Opened by AhmetNSimsek 8 months ago
Labels: enhancement, urgent, maintenance
#553 - Experimental: feature refactor using attributes
Pull Request -
State: closed - Opened by xgui3783 8 months ago
- 4 comments
#552 - `Feature.export` should be renamed to `Feature.to_zip`
Issue -
State: closed - Opened by xgui3783 8 months ago
- 2 comments
#551 - Neuroglancer fragments cannot be merged
Issue -
State: closed - Opened by AhmetNSimsek 8 months ago
- 1 comment
Labels: bug
#550 - Use codecov v3
Pull Request -
State: closed - Opened by AhmetNSimsek 8 months ago
#549 - Neuroglancer volume fetching
Pull Request -
State: closed - Opened by AhmetNSimsek 8 months ago
- 1 comment
Labels: enhancement, maintenance
#548 - fix: cancel previous workflows
Pull Request -
State: closed - Opened by xgui3783 8 months ago
- 1 comment
#547 - fix: takes long time to retrieve feature.dataset.name
Pull Request -
State: closed - Opened by xgui3783 8 months ago
- 1 comment
#546 - Template flow integration for spaces and parcellations
Issue -
State: open - Opened by AhmetNSimsek 8 months ago
Labels: data
#545 - Allow masking volumes with other volumes
Issue -
State: open - Opened by AhmetNSimsek 8 months ago
Labels: enhancement
#544 - fix: info uses siibra.retrieval module for local file cache
Pull Request -
State: closed - Opened by xgui3783 8 months ago
- 1 comment
#543 - Use Github repo connector for configurations
Pull Request -
State: closed - Opened by AhmetNSimsek 8 months ago
- 2 comments
Labels: enhancement, maintenance
#542 - update siibra-python code to use new configuration repo
Issue -
State: closed - Opened by xgui3783 9 months ago
#541 - split json-schema/schema validation to its own repository
Issue -
State: open - Opened by xgui3783 9 months ago
- 1 comment
#540 - migrate configuration from gitlab to github
Issue -
State: closed - Opened by xgui3783 9 months ago
- 4 comments
#539 - Add DZI support
Issue -
State: open - Opened by AhmetNSimsek 9 months ago
Labels: enhancement, user feedback
#538 - Fix image query
Pull Request -
State: closed - Opened by AhmetNSimsek 9 months ago
- 1 comment
#537 - refactor: warm cache
Pull Request -
State: closed - Opened by xgui3783 9 months ago
- 2 comments
#536 - Hotfix allen api paging
Pull Request -
State: closed - Opened by AhmetNSimsek 9 months ago
- 1 comment
#535 - feature id need to remain persistent, and ideally in the form of UUID
Issue -
State: open - Opened by xgui3783 9 months ago
#534 - Integrate siibra-cli as an optional package
Pull Request -
State: open - Opened by AhmetNSimsek 9 months ago
- 1 comment
Labels: enhancement
#533 - Example 02-007 (adding custom parcellation) fails since AICHA atlas webpage responds with 502 as of 12.01.2024
Issue -
State: closed - Opened by AhmetNSimsek 9 months ago
- 1 comment
Labels: documentation, data
#532 - feat: obtain colorscale of a connectivity profile
Pull Request -
State: closed - Opened by AhmetNSimsek 9 months ago
#531 - Fix assigning uncertain points to labelled maps #526
Pull Request -
State: closed - Opened by AhmetNSimsek 9 months ago
- 1 comment
#530 - [bug] features.get should not allow fuzzy matches, unless specified
Issue -
State: closed - Opened by xgui3783 9 months ago
- 5 comments
Labels: important, user feedback
#529 - Fix: from_pointset kde volume calculation
Pull Request -
State: closed - Opened by AhmetNSimsek 9 months ago
- 1 comment
#528 - volume.from_pointset needs revision
Issue -
State: open - Opened by dickscheid 9 months ago
- 1 comment
#527 - Use of cached_property
Issue -
State: closed - Opened by ch-schiffer 9 months ago
- 1 comment
Labels: caching&persistence, maintenance
#526 - Assignment of uncertain points to labelled maps not working
Issue -
State: closed - Opened by dickscheid 9 months ago
- 2 comments
Labels: bug
#525 - Maint sparseindex
Pull Request -
State: open - Opened by AhmetNSimsek 10 months ago
- 1 comment
Labels: maintenance
#524 - experimental: control siibra-explorer
Pull Request -
State: open - Opened by xgui3783 10 months ago
- 1 comment
#523 - Add the first location example
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
- 1 comment
Labels: maintenance
#522 - Prerelease maint
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
- 1 comment
Labels: maintenance
#521 - Maint: feature module
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
- 1 comment
Labels: maintenance
#520 - Assign maps and compute relations between parcellations
Pull Request -
State: open - Opened by AhmetNSimsek 10 months ago
- 3 comments
Labels: enhancement
#519 - Add support for python 3.11 and 3.12
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
- 1 comment
#518 - VEP parcellation doi
Issue -
State: closed - Opened by i-Zaak 10 months ago
- 3 comments
#517 - Maint: parc.find_regions as module method. clarify find_regions
Pull Request -
State: open - Opened by AhmetNSimsek 10 months ago
- 3 comments
Labels: maintenance
#516 - feat: allow meshes to be exported
Pull Request -
State: closed - Opened by xgui3783 10 months ago
- 3 comments
Labels: enhancement
#515 - `provider.boundingbox` -> `provider.get_boundingbox()`
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
- 1 comment
#514 - Doc: run_stale_examples locally
Pull Request -
State: closed - Opened by AhmetNSimsek 10 months ago
#513 - Placement of `Parcellation.find_regions` (and `Atlas.find_regions`) and it's functionality requires clarification
Issue -
State: open - Opened by AhmetNSimsek 10 months ago
Labels: maintenance
#512 - Drop support for EOL Python 3.7
Pull Request -
State: closed - Opened by hugovk 11 months ago
- 3 comments
#511 - Only attempt RTD build for upstream
Pull Request -
State: open - Opened by hugovk 11 months ago
- 1 comment
#510 - Increase intensity profile compounding speed
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago
- 1 comment
Labels: maintenance
#509 - Some CellDensityProfiles have invalid last boundary position
Issue -
State: open - Opened by AhmetNSimsek 11 months ago
- 1 comment
Labels: data
#508 - EbrainsPublicDatasetConnector cannot handle files with identical names
Issue -
State: open - Opened by ch-schiffer 11 months ago
#507 - bigbrain profiles: pull meshes and profiles from ebrains. Add dataset connection.
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago
- 2 comments
#506 - feat: add siibra-explorer module
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago
#505 - Introduce PointDistribution feature
Pull Request -
State: open - Opened by AhmetNSimsek 11 months ago
- 2 comments
Labels: enhancement
#504 - Maint: ebrains datasets, detail property should be private (#444)
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago
#503 - feat: add siibra-explorer module
Pull Request -
State: closed - Opened by xgui3783 11 months ago
- 1 comment
#502 - feat: add maps from nifti and label information
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago
#501 - Clean up map._assing_volume. fetch_iter goes through fragments as well
Pull Request -
State: closed - Opened by AhmetNSimsek 11 months ago