FEniCS/dolfinx issues and pull requests

#3517 - WIP: Fix Windows CI

Pull Request - State: open - Opened by jhale 3 months ago

#3516 - [BUG]: Interpolation into symmetric rank-2 tensors broken

Issue - State: closed - Opened by michalhabera 3 months ago - 1 comment
Labels: bug

#3515 - Remove debug print

Pull Request - State: closed - Opened by jorgensd 3 months ago

#3514 - Fix doc typo

Pull Request - State: closed - Opened by garth-wells 3 months ago
Labels: documentation

#3513 - Use separately allocated data for each call to MPI_Ineighbor_allgatherv

Pull Request - State: closed - Opened by chrisrichardson 3 months ago
Labels: bug

#3512 - Improve Topology construction and fix MPI/NBX bug

Pull Request - State: closed - Opened by garth-wells 3 months ago - 4 comments
Labels: enhancement

#3511 - PETSc SNES API in `dolfinx.xxxx.petsc` namespace

Issue - State: open - Opened by jorgensd 3 months ago - 1 comment
Labels: enhancement

#3510 - Require `nanobind>=2.2.0`

Pull Request - State: closed - Opened by francesco-ballarin 3 months ago - 2 comments
Labels: install, housekeeping

#3509 - Add `AdjacencyList` python wrapper

Pull Request - State: closed - Opened by schnellerhase 3 months ago

#3508 - Improve readability of form in HDG demo

Pull Request - State: closed - Opened by jpdean 3 months ago
Labels: demo

#3507 - Fix SNES NonlinearPDE class when using line search

Pull Request - State: closed - Opened by jhale 3 months ago - 10 comments

#3506 - Refactor C++ `dolfinx::mesh::Topology`

Issue - State: open - Opened by jorgensd 3 months ago
Labels: enhancement

#3505 - Unify code path of `DirichletBC::set`

Pull Request - State: closed - Opened by schnellerhase 3 months ago

#3504 - Expose set original cell index to python

Pull Request - State: closed - Opened by jorgensd 3 months ago - 2 comments
Labels: nanobind

#3503 - Remove loguru and old pugixml references

Pull Request - State: closed - Opened by jorgensd 3 months ago - 1 comment
Labels: housekeeping

#3502 - Start simplification and consistency fixes for `fem::FiniteElement`

Pull Request - State: closed - Opened by garth-wells 3 months ago

#3501 - [BUG]: Interior facet integrals give differing values in serial and in parallel

Issue - State: closed - Opened by bpachev 4 months ago - 6 comments
Labels: bug

#3500 - Add C++ demo that shows mixed elements and consistency fixes for element spaces

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: enhancement, demo

#3499 - Demo updates for LU solver bugs

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: demo, ci

#3498 - PETSc version bump to 3.22.1 in Dockerfiles

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: docker, ci

#3497 - Bump mpi4py/setup-mpi from 1.2.6 to 1.2.7

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, github_actions

#3496 - Simplify interface to `nanobind::ndarray`

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: housekeeping, nanobind

#3495 - cpp to MPI type mapping improvements

Pull Request - State: closed - Opened by schnellerhase 4 months ago - 11 comments

#3494 - Remove `TimeLogManager` and make `TimeLogger` singleton

Pull Request - State: closed - Opened by schnellerhase 4 months ago - 4 comments

#3493 - C++ style improvements in subdomain demo

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: housekeeping

#3492 - Add C++ demo that shows mixed elements and other advanced features

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: enhancement, demo, housekeeping

#3491 - Small updates to Newton Solver documentation.

Pull Request - State: closed - Opened by jhale 4 months ago

#3490 - Improve Newton solver docs

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: documentation

#3489 - Support uniform refinement of quadrilateral and hexahedral cell meshes

Issue - State: closed - Opened by garth-wells 4 months ago - 2 comments
Labels: enhancement

#3488 - Fixes to `Timer` logic

Pull Request - State: closed - Opened by garth-wells 4 months ago - 7 comments
Labels: enhancement

#3487 - Allow access to logged timer data

Pull Request - State: closed - Opened by garth-wells 4 months ago - 3 comments
Labels: enhancement

#3486 - Bump adios2, HDF5, MPICH and OPENMPI in docker images.

Pull Request - State: closed - Opened by jorgensd 4 months ago
Labels: docker

#3485 - Remove `Fides` file backend

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: housekeeping, io

#3484 - Revised `Timer`, now using `std::chrono`

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: task, dependencies

#3483 - Python wrappers for `AdjacencyList` and `FiniteElement` missing

Issue - State: closed - Opened by schnellerhase 4 months ago - 3 comments

#3482 - Adding edge_tags and vertex_tags to gmshio

Issue - State: closed - Opened by bayswiss 4 months ago - 2 comments
Labels: enhancement

#3481 - [BUG]: wrong output of interpolation_points() method for higher order N1curl elements (tetrahedra)?

Issue - State: closed - Opened by Moouuzi 4 months ago - 1 comment
Labels: bug

#3480 - Timer improvements

Issue - State: closed - Opened by schnellerhase 4 months ago

#3479 - Use standard C++20 (no GNU extensions)

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: build

#3478 - Update timer to use `std::chrono`

Pull Request - State: closed - Opened by schnellerhase 4 months ago - 10 comments

#3477 - Saddle point demo added

Pull Request - State: closed - Opened by niravshah241 4 months ago - 2 comments

#3476 - Improve build and optional dependency handing in Dockerfiles

Pull Request - State: closed - Opened by jhale 4 months ago

#3475 - Install all dependencies needed to run tests.

Pull Request - State: closed - Opened by jhale 4 months ago

#3474 - Re-enable Windows conda check using cmd.exe

Pull Request - State: closed - Opened by jhale 4 months ago

#3473 - Update version in Spack CI file

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: ci

#3472 - Spack CI update

Pull Request - State: closed - Opened by garth-wells 4 months ago
Labels: packaging, ci

#3471 - Allow promotion of geometry dimension for built-in mesh creators.

Pull Request - State: open - Opened by jhale 4 months ago - 1 comment

#3470 - Safe default value for unbound variables in dolfinx.conf

Pull Request - State: closed - Opened by mleoni-pf 4 months ago

#3469 - Update cffi requirement from <1.17 to <1.18 in /python

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies, python

#3468 - Add demo of nonlinear scipy solver

Pull Request - State: closed - Opened by jorgensd 4 months ago - 4 comments
Labels: demo

#3467 - Simplify conda weekly test

Pull Request - State: closed - Opened by jhale 4 months ago - 1 comment

#3466 - Update Windows conda instructions.

Pull Request - State: closed - Opened by jhale 4 months ago

#3465 - Verify main branch of cffi fixes complex number issue.

Pull Request - State: open - Opened by jhale 4 months ago - 3 comments

#3464 - Add pip to dependabot

Pull Request - State: closed - Opened by jhale 4 months ago

#3463 - Fix warnings from Docker build linter

Pull Request - State: closed - Opened by jhale 4 months ago

#3462 - Bump version to 0.10

Pull Request - State: closed - Opened by jhale 4 months ago

#3461 - Replace Boost Timer with `std::chrono`

Issue - State: closed - Opened by garth-wells 4 months ago - 3 comments
Labels: task

#3460 - Update release instructions.

Pull Request - State: closed - Opened by jhale 4 months ago

#3459 - Try Python 3.13

Pull Request - State: closed - Opened by jhale 4 months ago - 1 comment

#3458 - Fix arity order of operators in test

Pull Request - State: closed - Opened by jorgensd 4 months ago

#3457 - Bump mpi4py/setup-mpi from 1.2.2 to 1.2.6

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#3456 - [BUG]: `nympy.can_cast` issue in `dolfinx/mesh.py` with numpy 2.0.2

Issue - State: closed - Opened by cmaurini 5 months ago - 6 comments
Labels: bug

#3455 - Vertex submesh support

Pull Request - State: closed - Opened by jorgensd 5 months ago
Labels: enhancement

#3454 - Try latest nanobind on Windows

Pull Request - State: closed - Opened by jhale 5 months ago

#3453 - Fix bug in distribute

Pull Request - State: closed - Opened by chrisrichardson 5 months ago - 2 comments
Labels: bug, high-priority

#3452 - Fix codim-1 assembly on interior facets

Pull Request - State: closed - Opened by jorgensd 5 months ago - 1 comment
Labels: bug, high-priority

#3451 - Move to py311 for oneAPI test

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: ci

#3450 - Simplify blocked demos using `extract_blocks`

Pull Request - State: closed - Opened by jorgensd 5 months ago
Labels: demo

#3449 - Add comment in `pyproject.toml` on cffi version pin

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: housekeeping

#3448 - Use earlier NumPy version in Dockerfile

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: docker

#3447 - Return source rank for each node in constant degree adjacency list when distributing

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: enhancement

#3446 - Create demo in C++ that uses integration domains

Issue - State: closed - Opened by chrisrichardson 5 months ago - 3 comments
Labels: enhancement, high-priority

#3445 - Bump PETSC release

Pull Request - State: closed - Opened by jorgensd 5 months ago - 2 comments
Labels: docker, ci

#3444 - Pass graph partitioner to `mesh::refine`

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: enhancement

#3443 - Fix refined meshes with ghosts

Issue - State: open - Opened by garth-wells 5 months ago
Labels: bug, enhancement, high-priority

#3442 - Fix `create_cell_partitioner` interaction with `create_mesh`

Pull Request - State: closed - Opened by schnellerhase 5 months ago - 6 comments

#3441 - Remove commented line

Pull Request - State: closed - Opened by jorgensd 5 months ago

#3440 - Remove outdated demo

Pull Request - State: closed - Opened by chrisrichardson 5 months ago

#3439 - Check for interprocess facets when assembling interior facet integrals

Pull Request - State: closed - Opened by jorgensd 5 months ago - 3 comments
Labels: enhancement

#3438 - `codim_0_assembly` fails to build in complex mode

Issue - State: closed - Opened by garth-wells 5 months ago
Labels: bug, high-priority, demo

#3437 - `mixed_topology` demo fails to build

Issue - State: closed - Opened by garth-wells 5 months ago - 1 comment
Labels: bug, high-priority, demo

#3436 - Add `codim_0_assembly` demo to CMake

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: bug, high-priority, demo

#3435 - Remove deprecated method for accessing PETSc Vec in Python

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: housekeeping

#3434 - Use `std::optional` to reduce code duplication in boundary condition setting

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: enhancement, documentation, housekeeping

#3433 - Updating `demo_axis.py` and `demo_pml.py` for parallel computing

Pull Request - State: closed - Opened by jorgensd 5 months ago - 1 comment

#3432 - Fix mesh constructor again

Pull Request - State: closed - Opened by jorgensd 5 months ago - 2 comments
Labels: bug

#3431 - Fix integer overflow bug in sub-IndexMap extraction

Pull Request - State: closed - Opened by garth-wells 5 months ago
Labels: bug, high-priority

#3430 - allow larger tolerance in timing test

Pull Request - State: closed - Opened by drew-parsons 5 months ago

#3429 - Fix argument block-size in Expressions

Pull Request - State: closed - Opened by jorgensd 5 months ago - 1 comment
Labels: bug, high-priority, backport?

#3428 - [BUG]: module 'dolfinx' has no attribute 'has_petsc'

Issue - State: closed - Opened by yoczhang 5 months ago - 1 comment
Labels: bug

#3427 - Update Install instructions

Pull Request - State: closed - Opened by jhale 5 months ago - 1 comment

#3426 - Mainly

Pull Request - State: closed - Opened by obsfeil 5 months ago

#3425 - ok

Pull Request - State: closed - Opened by obsfeil 5 months ago

#3424 - Ne

Pull Request - State: closed - Opened by obsfeil 5 months ago

#3423 - Expose `Topology` in sphinx docs

Pull Request - State: closed - Opened by jorgensd 5 months ago

#3422 - A form can be empty and should return None

Pull Request - State: closed - Opened by jorgensd 5 months ago

#3421 - Fix Python wrapper of `distribute_entity_data`

Pull Request - State: closed - Opened by jorgensd 5 months ago
Labels: bug, high-priority

#3420 - Try with MPI windows python tests

Pull Request - State: closed - Opened by jhale 5 months ago - 3 comments

#3419 - Document `compute_midpoints` and remove outdated fixme.

Pull Request - State: closed - Opened by jorgensd 5 months ago
Labels: documentation

#3418 - [BUG]: MatrixCSR indices and indptr arrays created as read-only

Issue - State: closed - Opened by idoby 5 months ago - 3 comments
Labels: question

GitHub / FEniCS/dolfinx issues and pull requests