FCP-INDI/cpac issues and pull requests

#85 - ⬆️ Bump requests from 2.31.0 to 2.32.0

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#84 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#83 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#82 - 🎨 Standardize `.yaml` file extension

Pull Request - State: open - Opened by shnizzedy 5 months ago
Labels: bug, documentation

#81 - ✅ Update nightly tests for C-PAC v1.8.8.dev1

Pull Request - State: closed - Opened by shnizzedy 5 months ago
Labels: devops, testing

#80 - ⬆️ Bump the production-dependencies group across 1 directory with 3 updates

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#79 - 👷🔧 Upload dependabot-built testing images as @ChildMindInstituteCNL

Pull Request - State: closed - Opened by shnizzedy 5 months ago

#78 - ⬆️ Bump jinja2 from 3.1.3 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 4 comments
Labels: dependencies, python

#77 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 5 comments
Labels: dependencies, python

#76 - 🔖 v1.8.7 to conincide with https://github.com/FCP-INDI/C-PAC/pull/2100

Pull Request - State: closed - Opened by shnizzedy 5 months ago

#75 - 🔒️ Resolve dependabot alerts 1, 3‒5, 9‒12

Pull Request - State: closed - Opened by shnizzedy 5 months ago

#74 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies, python

#73 - ⬆️ Bump coveralls from 1.8.0 to 3.3.1 in the production-dependencies group

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#72 - ⬆️ Bump idna from 3.6 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#71 - 🐛 Fix `cpac --platform singularity run` without `instance not found` error

Pull Request - State: closed - Opened by shnizzedy 6 months ago
Labels: bug, user-reported, Singularity

#70 - ✅ Restore Apptainer tests

Pull Request - State: closed - Opened by shnizzedy 6 months ago
Labels: devops, testing

#69 - 🧠🌟 Running cpac run: instance not found

Issue - State: open - Opened by shnizzedy 6 months ago
Labels: support, user-reported, neurostars

#68 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, python

#67 - ⬆️ Bump the production-dependencies group with 3 updates

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies, python

#66 - ⬆️ Bump the production-dependencies group with 2 updates

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, python

#65 - ⬆️ Bump the production-dependencies group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies, python

#64 - ⬆️ Bump cryptography from 41.0.7 to 42.0.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies, python

#63 - ⬆️ Bump the production-dependencies group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#62 - ⬆️ Bump cryptography from 41.0.7 to 42.0.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#61 - ⬆️ Bump cryptography from 41.0.7 to 42.0.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#60 - ⬆️ Bump the production-dependencies group with 1 update

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies, python

#59 - 📦️ Wrap containerized `ba-timeseries-gradients`

Pull Request - State: closed - Opened by shnizzedy 8 months ago

#58 - ⬆️ Bump the production-dependencies group with 7 updates

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies, python

#57 - 🔖 v1.8.6

Pull Request - State: closed - Opened by shnizzedy 9 months ago

#56 - 🔧 Configure dependabot

Pull Request - State: closed - Opened by shnizzedy 9 months ago
Labels: devops

#55 - ✅ Fix version check for tests

Pull Request - State: closed - Opened by shnizzedy 9 months ago

#54 - ⬆️ Bump tornado from 6.2 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, python

#53 - ⬆️ Bump numpy from 1.21.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, python

#52 - ⬆️ Bump jinja2 from 3.1.2 to 3.1.3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, python

#51 - ⬆️ Bump actions/setup-go from 2 to 5

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, github_actions

#50 - ⬆️ Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies, github_actions

#49 - ⬆️ Bump actions/setup-python from 1 to 5

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 3 comments
Labels: dependencies, github_actions

#48 - v1.8.5

Pull Request - State: closed - Opened by shnizzedy 9 months ago

#47 - ✨ Add `gradients` and `tsconcat` commands to `cpac`

Pull Request - State: closed - Opened by shnizzedy 9 months ago - 3 comments

#46 - 📦️ Replace `setuptools` with `poetry` & 🚨 lint codebase

Pull Request - State: closed - Opened by shnizzedy 9 months ago

#45 - 🐛 PyPI: `Can't have direct dependency`

Issue - State: open - Opened by shnizzedy 9 months ago - 2 comments
Labels: bug, user-reported

#44 - 📝 Add note about cpac versioning

Pull Request - State: closed - Opened by shnizzedy 9 months ago

#43 - ✨ Add `tsconcat` command to `cpac`

Pull Request - State: closed - Opened by shnizzedy 10 months ago

#42 - ✨ Call `ba-timeseries-gradients` from wrapper

Pull Request - State: closed - Opened by shnizzedy 10 months ago

#40 - 📦️ Replace `setuptools` with `poetry` & 🚨 lint codebase

Pull Request - State: closed - Opened by shnizzedy 10 months ago

#39 - ✨ Call `ba-timeseries-gradients` and `tsconcat` from wrapper

Issue - State: open - Opened by shnizzedy 10 months ago

#38 - 🔖 Version 0.6.0

Pull Request - State: closed - Opened by shnizzedy over 1 year ago

#37 - Install the CodeSee workflow.

Pull Request - State: closed - Opened by ghost over 1 year ago

#36 - 👽️ Upgrade to handle changes in C-PAC, Python and Mac OS

Pull Request - State: closed - Opened by shnizzedy over 1 year ago - 1 comment

#35 - 🐛 Could not find the file `/cpac_resources/default_pipeline.yml` in container

Issue - State: closed - Opened by neurosurd over 1 year ago - 4 comments
Labels: bug, user-reported

#34 - Windows support

Pull Request - State: open - Opened by nx10 over 1 year ago

#33 - 🔖 Release v0.5.0

Pull Request - State: closed - Opened by shnizzedy over 2 years ago - 1 comment

#32 - 👷 Tests are failing in Singularity on GitHub Actions but passing locally

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: bug, devops, testing

#31 - ✨ Add Apptainer to backends

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: enhancement

#30 - 🔥 Remove any directories that cpac creates but does not populate

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: enhancement, good first issue

#29 - 🐛 Fix `--version`, add `enter`, `parse-resources` and `version`, and fix tests

Pull Request - State: closed - Opened by shnizzedy over 2 years ago
Labels: bug, documentation, enhancement, support, user-reported

#28 - 🐛 `utils data_config build command` `PermissionError`

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: bug, user-reported

#27 - 📛 Rename this tool

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: documentation, enhancement, help wanted, question, support, user-reported

#26 - add memory usage/estimation quick parser utility

Pull Request - State: closed - Opened by gkiar over 2 years ago

#25 - 🚸 Just bind data config file instead of whole directory containing data config file

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: enhancement, user-reported

#24 - 🔖 [Version 0.4.0: Goodbye Singularity Hub](https://github.com/FCP-INDI/cpac/releases/tag/v0.4.0)

Pull Request - State: closed - Opened by shnizzedy over 2 years ago

#23 - 🚸 Automatically bind path given in `outputSubjectListLocation` for `cpac utils data_config build`

Issue - State: open - Opened by shnizzedy over 2 years ago
Labels: enhancement, user-reported

#22 - 🐛 `cpac --version` does not return version

Issue - State: closed - Opened by shnizzedy almost 3 years ago - 1 comment
Labels: bug, user-reported

#21 - 🐛 `OSError: [Errno 30] Read-only file system`

Issue - State: closed - Opened by keithcdodd almost 3 years ago - 11 comments
Labels: bug, user-reported, MacOS, Docker

#20 - 👽️ Deprecate/Singularity Hub

Pull Request - State: closed - Opened by shnizzedy almost 3 years ago
Labels: Hacktoberfest

#19 - 🐛 Warn instead of crash for minimal config

Pull Request - State: closed - Opened by shnizzedy about 3 years ago

#18 - 🐛 `-o` / `--container_option` does not work as expected

Issue - State: open - Opened by shnizzedy about 3 years ago
Labels: bug, Hacktoberfest

#17 - 🐛 Running a minimal config doesn't work with the wrapper

Issue - State: closed - Opened by shnizzedy about 3 years ago
Labels: bug

#16 - 🐛 Bad Request ("Duplicate mount point")

Issue - State: open - Opened by shnizzedy over 3 years ago
Labels: bug, Hacktoberfest

#15 - 🏁 Windows: `pwd` not available

Issue - State: open - Opened by Evan1578 over 3 years ago - 2 comments
Labels: bug, documentation, enhancement, good first issue, support, Windows, Hacktoberfest