FAIRDataPipeline/rDataPipeline issues and pull requests

#206 - Update Actions

Pull Request - State: closed - Opened by RyanJField 3 months ago

#205 - Fix new r

Pull Request - State: closed - Opened by RyanJField 4 months ago - 1 comment

#204 - Update maintainer

Pull Request - State: closed - Opened by RyanJField 4 months ago

#203 - Fixes for latest R

Pull Request - State: closed - Opened by RyanJField 4 months ago

#202 - Hotfix/datastore

Pull Request - State: closed - Opened by RyanJField over 1 year ago

#201 - Common FAIRDataPipeline Software Checks

Issue - State: open - Opened by bobturneruk almost 3 years ago

#200 - windows fix

Pull Request - State: closed - Opened by RyanJField about 3 years ago - 1 comment

#199 - [unconfirmed] Generate a code run interactively, in R

Issue - State: open - Opened by soniamitchell about 3 years ago
Labels: enhancement

#198 - [unconfirmed] R should be able to write to a config file taking a data file path as an argument

Issue - State: open - Opened by soniamitchell about 3 years ago
Labels: enhancement

#197 - Clean up working config in `finalise()`

Issue - State: open - Opened by soniamitchell about 3 years ago - 1 comment
Labels: enhancement, question

#196 - Integrate CLI with unit tests

Pull Request - State: open - Opened by soniamitchell about 3 years ago - 1 comment

#195 - Remove config file / registry testing

Issue - State: open - Opened by soniamitchell about 3 years ago
Labels: on hold

#194 - Remove R implementation of fair CLI functionality

Issue - State: open - Opened by soniamitchell about 3 years ago
Labels: question

#193 - Integrate CLI with unit tests

Pull Request - State: closed - Opened by soniamitchell about 3 years ago - 1 comment

#192 - Re-enable tests

Issue - State: open - Opened by soniamitchell about 3 years ago
Labels: on hold

#191 - Edits

Pull Request - State: closed - Opened by soniamitchell about 3 years ago

#190 - update news

Pull Request - State: closed - Opened by soniamitchell about 3 years ago

#189 - Write to `tempdir()` as requested by cran

Pull Request - State: closed - Opened by soniamitchell about 3 years ago - 1 comment

#188 - Edits

Pull Request - State: closed - Opened by soniamitchell about 3 years ago - 1 comment

#187 - fix CI

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#186 - add version to header

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 3 comments

#185 - Ensure existing h5 / toml files aren't added to in a new code run

Issue - State: open - Opened by soniamitchell over 3 years ago

#184 - Will `write_data_store` ever have an alternative in the `use:` block?

Issue - State: open - Opened by soniamitchell over 3 years ago - 1 comment
Labels: question

#183 - Should it be possible to write an additional component to a data product written in a different code run?

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment
Labels: question

#182 - check registry version in header

Issue - State: open - Opened by soniamitchell over 3 years ago - 2 comments

#181 - update docs

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#180 - Add software checklist

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#179 - Is there a field in the config file that determines whether the GitHub repo is public?

Issue - State: open - Opened by soniamitchell over 3 years ago - 1 comment
Labels: question

#178 - Ensure data products aren't duplicated in the handle

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#177 - Will the wildcard always be at the end of the data product string?

Issue - State: open - Opened by soniamitchell over 3 years ago - 4 comments
Labels: question

#176 - Implement wildcards in API

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#175 - implement wildcards in API

Issue - State: closed - Opened by soniamitchell over 3 years ago

#174 - prepend storage_root with `file://` in data registry

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#173 - Add tests and refactor

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#172 - `finalise()` should check whether or not the user has actually saved a file in the `link_write()` location

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#171 - Check whether path is available for potential writes

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#170 - Will the submission script written by `fair run` always be a `sh` file?

Issue - State: open - Opened by soniamitchell over 3 years ago - 7 comments
Labels: question

#169 - Add `file://` to StorageRoot entries

Issue - State: closed - Opened by soniamitchell over 3 years ago - 6 comments

#168 - Implement CodeRepoRelease?

Issue - State: closed - Opened by soniamitchell over 3 years ago - 2 comments

#167 - Implement `cache:`?

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#166 - Never register a `namespace` entry

Issue - State: open - Opened by soniamitchell over 3 years ago - 1 comment

#165 - Don't write to the handle multiple times when `read_()` or `write()` functions are called

Issue - State: closed - Opened by soniamitchell over 3 years ago

#164 - What `file_type` should the remote repo have?

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#163 - Ensure `public` is handled correctly

Issue - State: open - Opened by soniamitchell over 3 years ago

#162 - Minor edits

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#161 - get provenance report

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#160 - Tidy up

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#159 - remove files

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#158 - tidy up

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#157 - Integrate cli

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#156 - fix CI

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#155 - try to fix tests

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#154 - remove file

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#153 - try to put CI online

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#152 - Tests

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#151 - extract repo root

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#150 - Delete if duplicate

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#149 - delete code run

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#148 - Schema edits

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#147 - implement

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#146 - documentation

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#145 - New method of attaching author to objects

Issue - State: closed - Opened by soniamitchell over 3 years ago

#144 - write better documentation for functions

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment
Labels: enhancement

#143 - Various edits

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#142 - fix version increment

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#141 - Fix `${{MAJOR}}` variable and check others

Issue - State: closed - Opened by soniamitchell over 3 years ago

#140 - Account for white space in variables

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment
Labels: enhancement

#139 - Input globbing

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#138 - Delete if empty

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#137 - Issue edits

Pull Request - State: closed - Opened by soniamitchell over 3 years ago - 1 comment

#136 - Issue with config

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#135 - Multiple coderuns

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#134 - Endpoints

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#133 - output globbing (part 2)

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#132 - Output globbing

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#131 - fix cmd check

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#130 - fix cmd check

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#129 - Remove prefix

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#128 - Attach author

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#127 - Edits

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#126 - `delete_if_empty` argument in `finalise()` to delete code runs that produce no output

Issue - State: closed - Opened by soniamitchell over 3 years ago - 3 comments
Labels: enhancement, on hold

#125 - Add tests

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#124 - Issues multi

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#123 - Fix finalise

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#122 - minor fixes related to implementing the `${{DPAPI.RUN_ID}}` variable

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#121 - Implement public

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#120 - Run

Pull Request - State: closed - Opened by soniamitchell over 3 years ago

#119 - add issues to multiple objects or components

Issue - State: closed - Opened by soniamitchell over 3 years ago
Labels: enhancement

#118 - `delete_if_duplicate` argument for incremented versions in `finalise()`

Issue - State: closed - Opened by soniamitchell over 3 years ago - 5 comments
Labels: enhancement

#117 - multiple `code_run`s from the same config file

Issue - State: closed - Opened by soniamitchell over 3 years ago
Labels: enhancement

#116 - allow users to read (and write) multiple versions of a component from the same config

Issue - State: closed - Opened by soniamitchell over 3 years ago - 8 comments
Labels: enhancement

#115 - implement `public` flag in `finalise()` and other functions

Issue - State: closed - Opened by soniamitchell over 3 years ago
Labels: validation

#114 - drop the variable prefixes CLI. and DPAPI.

Issue - State: closed - Opened by soniamitchell over 3 years ago

#108 - Attach issues to scripts and code

Issue - State: closed - Opened by soniamitchell over 3 years ago - 4 comments
Labels: enhancement

#107 - Attach issues to code runs

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment
Labels: enhancement, question, on hold

#106 - Attach issues to external objects

Issue - State: closed - Opened by soniamitchell over 3 years ago - 2 comments
Labels: enhancement, question, on hold

#103 - Update R section on website

Issue - State: closed - Opened by soniamitchell over 3 years ago - 1 comment
Labels: documentation

#102 - Update tests and link to remote endpoint

Issue - State: open - Opened by soniamitchell over 3 years ago - 1 comment
Labels: validation, on hold

#101 - Implement output globbing

Issue - State: closed - Opened by soniamitchell over 3 years ago - 5 comments
Labels: enhancement

#100 - Implement input globbing

Issue - State: closed - Opened by soniamitchell over 3 years ago - 3 comments
Labels: enhancement

GitHub / FAIRDataPipeline/rDataPipeline issues and pull requests