Edinburgh-Genome-Foundry/DnaFeaturesViewer issues and pull requests

#90 - Aligning two sequences

Issue - State: open - Opened by cmfield 18 days ago

#89 - Fix AttributeError: 'Seq' object has no attribute 'defined' as described in #88

Pull Request - State: open - Opened by sbassi about 1 month ago

#88 - AttributeError: 'Seq' object has no attribute 'defined'

Issue - State: open - Opened by sbassi about 1 month ago - 1 comment

#87 - Set custom feature_level_height for each GraphicFeature

Issue - State: open - Opened by josephrich98 3 months ago - 1 comment

#86 - Dna first project

Issue - State: closed - Opened by aymen3052001 5 months ago

#85 - feature location in a join, how to correnctly translate

Issue - State: open - Opened by albodrug 6 months ago - 3 comments

#84 - 'Seq' object has no attribute 'defined'

Issue - State: closed - Opened by mwodring 9 months ago - 2 comments

#83 - Oval or diamond/octagon in addition to arrows for displayed features?

Issue - State: open - Opened by photocyte 9 months ago - 1 comment
Labels: enhancement

#82 - UndefinedSequenceError with gff files and BioPython 1.81

Issue - State: closed - Opened by photocyte 11 months ago

#81 - CircularGraphicRecord does not work. Unable to make circular graphs

Issue - State: closed - Opened by meint52 12 months ago - 1 comment

#80 - Overlapping arrows in circular DNA

Issue - State: open - Opened by ZongzhiWu about 1 year ago - 1 comment

#79 - Add support for biopython 1.81

Pull Request - State: closed - Opened by Benedict-Carling about 1 year ago - 4 comments
Labels: bug

#78 - How to solve the memory problem of batch plotting？

Issue - State: closed - Opened by brilliantlee2 over 1 year ago - 3 comments

#77 - sequences display from 1 not 0 ?

Issue - State: open - Opened by taoym470 over 1 year ago - 1 comment

#76 - type error for global variable related to BioPython update

Issue - State: closed - Opened by xonq over 1 year ago - 2 comments

#75 - To fix the concatenation error

Pull Request - State: closed - Opened by rraadd88 almost 2 years ago - 1 comment

#74 - Compatibility with biopython 1.8.0 and bokeh 3

Pull Request - State: closed - Opened by MrTomRod almost 2 years ago - 3 comments

#73 - Error on BioPython v1.8.0

Issue - State: closed - Opened by mbiokyle29 almost 2 years ago - 9 comments

#72 - type hints support

Issue - State: open - Opened by antonkulaga almost 2 years ago - 1 comment

#71 - figure is not coming

Issue - State: closed - Opened by byeollee almost 2 years ago

#70 - truncated scaffolds from gff files

Issue - State: open - Opened by simarilion almost 2 years ago - 4 comments

#69 - Add an example which plots sequence features not starting from 0

Issue - State: closed - Opened by alexlenail over 2 years ago - 5 comments

#68 - Linking exon annotations with intron lines, and other things.

Issue - State: open - Opened by mrmrwinter over 2 years ago - 5 comments

#67 - Enhanced Bokeh support for multiple plots

Issue - State: open - Opened by AdrianVillastrigo over 2 years ago - 2 comments

#66 - Feature request: x_lim best-fit

Issue - State: closed - Opened by outpaddling over 2 years ago - 6 comments

#65 - closes #63; gene spans the scaffold

Pull Request - State: open - Opened by MrTomRod almost 3 years ago

#64 - Labels overlap whan sharing axis

Issue - State: open - Opened by Ale-Rossi almost 3 years ago - 2 comments

#63 - BiopythonTranslator: SeqFeatures with location_operator='join' get wrong position

Issue - State: open - Opened by MrTomRod almost 3 years ago

#62 - Update multiline plot for translation

Pull Request - State: closed - Opened by RekhaAngara about 3 years ago - 1 comment

#61 - Cannot apply sequence translation on plot_on_multiple_lines or plot_on_multiple_pages

Issue - State: open - Opened by RekhaAngara about 3 years ago - 2 comments
Labels: enhancement

#60 - Unable to change sequence font size

Pull Request - State: closed - Opened by katondr about 3 years ago - 3 comments

#59 - Change shape of feature arrows

Issue - State: closed - Opened by Switham1 over 3 years ago - 2 comments

#58 - Broken Axis

Issue - State: open - Opened by lisiarend over 3 years ago - 1 comment

#57 - Fix #56

Pull Request - State: closed - Opened by veghp over 3 years ago

#56 - plot_with_bokeh gives BAD_COLUMN_NAME errors and uses default font when using bokeh 2.3.0

Issue - State: closed - Opened by kiramt over 3 years ago - 1 comment

#55 - plot_with_bokeh ignores strand=0 and still plots arrowhead

Issue - State: closed - Opened by kiramt over 3 years ago - 1 comment

#54 - How to use `plot_on_multiple_pages` with `ax` attribute ?

Issue - State: open - Opened by bioinfornatics over 3 years ago - 1 comment

#53 - How to display differences from Variant Calling File?

Issue - State: closed - Opened by bioinfornatics over 3 years ago - 5 comments

#52 - To bold the base

Issue - State: open - Opened by Sameerpython over 3 years ago - 4 comments

#51 - Update biotools.py

Pull Request - State: closed - Opened by photocyte almost 4 years ago - 1 comment

#50 - Add plotly plotting functionality

Pull Request - State: open - Opened by ATayls almost 4 years ago - 4 comments

#49 - no encoding declared in GraphicRecord.py

Issue - State: closed - Opened by tniapp almost 4 years ago - 1 comment
Labels: bug

#48 - Bio.Alphabet

Issue - State: closed - Opened by ZarulHanifah almost 4 years ago - 2 comments

#47 - Feature Annotations Below Track

Issue - State: open - Opened by smk508 almost 4 years ago

#46 - Add locus_tag to GraphicRecord by default

Pull Request - State: closed - Opened by MrTomRod almost 4 years ago - 4 comments

#45 - Vertical Plot

Issue - State: open - Opened by smk508 almost 4 years ago - 5 comments

#44 - Plotting specific coordinates from a gff3 file

Issue - State: closed - Opened by soungalo about 4 years ago - 3 comments

#43 - Truncated labels

Issue - State: closed - Opened by sejmodha about 4 years ago - 3 comments

#42 - Overlaping arrows

Issue - State: open - Opened by ghutinet about 4 years ago - 8 comments

#41 - Biopython <=1.77 compatibility fix

Pull Request - State: closed - Opened by veghp about 4 years ago - 1 comment

#40 - How to put label off

Issue - State: open - Opened by sameerh about 4 years ago - 3 comments

#39 - Zoom in the locally_highlighted_record result

Issue - State: closed - Opened by J-I-P about 4 years ago - 1 comment

#38 - How can I put italics to my genes?

Issue - State: open - Opened by BenjaDuran about 4 years ago - 4 comments

#37 - support for interactive plot?

Issue - State: open - Opened by YichaoOU over 4 years ago - 2 comments

#36 - add optional argument to define bokeh tools, removed print statement

Pull Request - State: closed - Opened by MrTomRod over 4 years ago - 1 comment

#35 - Specify bokeh tools

Issue - State: closed - Opened by MrTomRod over 4 years ago - 2 comments

#34 - GFF plot doesnt work

Issue - State: open - Opened by ZarulHanifah over 4 years ago - 4 comments

#33 - Current version '3.0.1' adds labels inside genome features

Issue - State: closed - Opened by jolespin over 4 years ago - 3 comments

#32 - fix bug in xtick label for `plots_indexing="genbank"`

Pull Request - State: closed - Opened by jbloom over 4 years ago - 2 comments

#31 - FigureCanvasQTCairo

Issue - State: open - Opened by andersonbrito over 4 years ago - 4 comments

#30 - Zoom in capability?

Issue - State: closed - Opened by mortonjt over 4 years ago - 2 comments

#29 - Circular DNA feature wrap issue

Issue - State: open - Opened by mmcguffi over 4 years ago - 2 comments

#28 - Circular plasmid text annotation issues

Issue - State: open - Opened by mmcguffi over 4 years ago - 3 comments

#27 - Display plot_translation in multi-page plot

Issue - State: open - Opened by Yu-jinKim over 4 years ago - 2 comments

#26 - bug in graphic_record.plot with x_lim?

Issue - State: closed - Opened by dmnfarrell over 4 years ago - 2 comments

#25 - Some plots have labels hidden

Issue - State: open - Opened by EulleSA over 4 years ago - 5 comments

#24 - Hidden bokeh tools

Issue - State: closed - Opened by EulleSA over 4 years ago - 3 comments

#23 - Big coordinates not handled

Issue - State: closed - Opened by Yu-jinKim almost 5 years ago - 14 comments

#22 - Plotting a region reversed

Issue - State: closed - Opened by MrTomRod almost 5 years ago - 4 comments

#21 - Pop-up in bokeh plot

Issue - State: open - Opened by EulleSA almost 5 years ago - 2 comments

#20 - CroppingGraphicRecord.crop: ValueError at boundary condition

Issue - State: closed - Opened by MrTomRod almost 5 years ago - 3 comments

#19 - fix a typo

Pull Request - State: closed - Opened by Lix1993 almost 5 years ago - 3 comments

#18 - fix #17

Pull Request - State: closed - Opened by royludo almost 5 years ago - 2 comments

#17 - The "plot_with_bokeh" It doesn't work very well

Issue - State: closed - Opened by EulleSA almost 5 years ago - 2 comments

#16 - How to embed.

Issue - State: closed - Opened by picousse about 5 years ago - 2 comments

#15 - `ValueError` from the `matplotlib` backend

Issue - State: closed - Opened by jolespin about 5 years ago - 8 comments

#14 - edge colouring

Issue - State: closed - Opened by jjkoehorst over 5 years ago - 2 comments

#13 - Hard-coded font size in plot_sequence

Issue - State: closed - Opened by webermarcolivier over 5 years ago - 1 comment

#12 - plot a region of genbank file

Issue - State: closed - Opened by webermarcolivier about 6 years ago - 4 comments

#11 - Installation from conda

Issue - State: open - Opened by thierryjanssens about 6 years ago - 3 comments

GitHub / Edinburgh-Genome-Foundry/DnaFeaturesViewer issues and pull requests