Edinburgh-Genome-Foundry/DnaCauldron issues and pull requests

#22 - Palindromes in Golden Gate assembly, only want one construct

Issue - State: open - Opened by stephenturner 4 months ago - 5 comments

#21 - fix write_report() for zip files

Pull Request - State: closed - Opened by Zulko about 1 year ago

#20 - Unwanted case-sensitivity when indexing fragment against source record

Issue - State: closed - Opened by bwvogler about 1 year ago - 2 comments
Labels: bug

#19 - Fix #18 : account for new "inplace" parameter in more recent biopython

Pull Request - State: closed - Opened by Zulko over 1 year ago - 2 comments

#18 - TypeError: StickyEndSeq.reverse_complement() got an unexpected keyword argument 'inplace'

Issue - State: closed - Opened by antonkulaga over 1 year ago - 1 comment
Labels: bug

#17 - example with ladders

Issue - State: open - Opened by antonkulaga about 2 years ago - 1 comment

#16 - Test fails with Biopython v1.79

Issue - State: closed - Opened by veghp over 2 years ago - 1 comment
Labels: bug

#15 - Assembling fragments digested by different enzymes

Issue - State: open - Opened by AubinF over 2 years ago - 5 comments

#14 - Purpose of OligoPairAnnealing class (oligo_annealing method in assembly plan)

Issue - State: closed - Opened by veghp over 2 years ago - 2 comments
Labels: question

#13 - Annotating features with qualifiers

Issue - State: closed - Opened by benweinberg89 almost 3 years ago - 1 comment

#12 - The tutorial uses parts as keyword argument for SequenceRepository but now its collections as dict of dict

Issue - State: closed - Opened by fbertaux almost 3 years ago - 1 comment
Labels: enhancement

#11 - pdf_reports required but not installed by pip

Issue - State: closed - Opened by fbertaux almost 3 years ago - 1 comment

#10 - Check parts assembling into enzyme sites

Issue - State: closed - Opened by veghp almost 3 years ago
Labels: enhancement

#9 - Choosing enzyme in AssemblyPlan.from_spreadsheet()

Issue - State: closed - Opened by veghp almost 3 years ago
Labels: enhancement

#8 - annotations crossing overhangs lost

Issue - State: open - Opened by aaroncooper over 3 years ago - 7 comments
Labels: enhancement

#7 - Dev

Pull Request - State: closed - Opened by veghp almost 4 years ago

#6 - PDF report

Pull Request - State: closed - Opened by veghp almost 4 years ago - 1 comment

#5 - Linear assemblies?

Issue - State: open - Opened by gjerman about 4 years ago - 3 comments
Labels: enhancement

#4 - Biopython v1.78 compatibility

Pull Request - State: closed - Opened by veghp about 4 years ago - 2 comments

#3 - use rapidfuzz instead of fuzzywuzzy

Pull Request - State: closed - Opened by maxbachmann over 4 years ago - 1 comment

#2 - problem with snapgene_reader

Issue - State: closed - Opened by jurquiza over 5 years ago - 3 comments

#1 - Fix installation from PyPI sources

Pull Request - State: closed - Opened by althonos about 6 years ago - 4 comments

Ecosyste.ms: Issues

GitHub / Edinburgh-Genome-Foundry/DnaCauldron issues and pull requests