Ecosyste.ms: Issues

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GitHub / EPFL-LCSB/pytfa issues and pull requests

#56 - equilibrator-cache replaced quilt with zenodo

Issue - State: open - Opened by chrismgowen almost 2 years ago

#55 - Problem with building Docker container

Issue - State: closed - Opened by RieCo432 almost 2 years ago - 1 comment

#54 - Comma missing in constraint definition

Issue - State: open - Opened by bharathn1990 almost 3 years ago

#53 - Problem with installation

Issue - State: open - Opened by norle almost 3 years ago - 2 comments

#52 - Dev

Pull Request - State: closed - Opened by psalvy over 3 years ago - 1 comment

#51 - KeyError on .convert()

Issue - State: open - Opened by mdziurzynski almost 4 years ago - 2 comments

#50 - ENH: allow different annotation keys

Pull Request - State: open - Opened by carrascomj almost 4 years ago

#49 - optlang GLPK interface does not handle tolerance anymore

Pull Request - State: closed - Opened by psalvy almost 4 years ago

#48 - Solution for pytfa.relax_dgo (sympy)

Pull Request - State: closed - Opened by embt almost 4 years ago
Labels: bug

#47 - Problem with pytfa.relax_dgo due to sympy

Issue - State: open - Opened by embt almost 4 years ago - 2 comments

#46 - this is a joke

Pull Request - State: closed - Opened by 12rambau almost 4 years ago
Labels: enhancement

#45 - Relaxation of log concentration error

Issue - State: open - Opened by svevol over 4 years ago - 1 comment

#44 - Use displacement or not?

Issue - State: closed - Opened by sulheim over 4 years ago - 1 comment

#43 - Get new delta G values after adding metabolomics data

Issue - State: closed - Opened by sulheim over 4 years ago - 1 comment

#42 - Allow saving of imported mat files as json

Pull Request - State: closed - Opened by Wealing over 4 years ago - 6 comments

#41 - Name correction

Pull Request - State: closed - Opened by Wealing over 4 years ago - 1 comment

#40 - tutorial_basic.py ERROR - Relaxation could not complete (no DeltaG relaxation found)

Issue - State: closed - Opened by mretier almost 5 years ago - 7 comments
Labels: question

#39 - tutorial_basics lots of warnings when mytfa.prepare()

Issue - State: closed - Opened by mretier almost 5 years ago - 2 comments

#38 - Feat equilibrator thermodata

Pull Request - State: closed - Opened by carrascomj about 5 years ago - 17 comments
Labels: enhancement

#37 - FIX: two issues in chebyshev script were fixed

Pull Request - State: closed - Opened by OmidOftadeh about 5 years ago - 1 comment

#36 - Integration with eQuilibrator

Issue - State: open - Opened by carrascomj about 5 years ago - 8 comments
Labels: enhancement

#35 - Fixing a couple of minor bugs and added new variable class

Pull Request - State: closed - Opened by remidhum about 5 years ago - 5 comments
Labels: bug

#34 - VER: release v0.9.1

Pull Request - State: closed - Opened by realLCSB over 5 years ago

#33 - FIX: elif issubclass(elements[0], GenericClass):

Pull Request - State: closed - Opened by OmidOftadeh over 5 years ago
Labels: invalid

#32 - FIX: from warnings import warn

Pull Request - State: closed - Opened by OmidOftadeh over 5 years ago - 1 comment
Labels: invalid

#31 - FIX: In dict serialization, dynamic variable and constraint update

Pull Request - State: closed - Opened by weilandtd over 5 years ago

#30 - deltaGerr automatically sets to 2.0 after loading thermo model

Issue - State: closed - Opened by remidhum over 5 years ago - 2 comments
Labels: enhancement

#29 - Dev: Incremental update

Pull Request - State: closed - Opened by psalvy over 5 years ago - 1 comment

#28 - KeyError and potential solution in sampling tutorial

Issue - State: closed - Opened by adamkova over 5 years ago - 4 comments
Labels: bug

#27 - Dev: Hotfix v 0.9.0-b1

Pull Request - State: closed - Opened by realLCSB over 5 years ago - 1 comment

#26 - VER: 0.9 - RedGEM is Here!

Pull Request - State: closed - Opened by realLCSB over 5 years ago - 1 comment

#25 - FIX: Init HRSampler in GeneralizedHRSampler

Pull Request - State: closed - Opened by remidhum over 5 years ago - 1 comment

#24 - BUMP to v0.8.1

Pull Request - State: closed - Opened by psalvy almost 6 years ago

#23 - Dev

Pull Request - State: closed - Opened by psalvy almost 6 years ago - 1 comment

#22 - Adding solver setup documentation

Pull Request - State: closed - Opened by psalvy almost 6 years ago - 1 comment

#21 - DOC: Adding links to our paper

Pull Request - State: closed - Opened by psalvy about 6 years ago

#20 - solution.f is deprecated

Pull Request - State: closed - Opened by psalvy about 6 years ago - 1 comment

#19 - Dev

Pull Request - State: closed - Opened by psalvy over 6 years ago - 1 comment

#18 - FIX: Catch None type in formulas

Pull Request - State: closed - Opened by weilandtd over 6 years ago - 1 comment

#17 - VER: BUMP 0.7.1-b2 after @weilandtd fix

Pull Request - State: closed - Opened by psalvy over 6 years ago

#16 - FIX: robustness for emty fields in matlab models

Pull Request - State: closed - Opened by weilandtd over 6 years ago - 2 comments

#15 - Polishing

Pull Request - State: closed - Opened by psalvy over 6 years ago - 3 comments

#14 - Dev

Pull Request - State: closed - Opened by psalvy over 6 years ago - 1 comment

#13 - VER: Bump to 0.7.0-b2

Pull Request - State: closed - Opened by psalvy over 6 years ago - 1 comment

#12 - BUMP: ver. 0.7.0-b1

Pull Request - State: closed - Opened by psalvy almost 7 years ago - 1 comment

#11 - metabolomics integration

Issue - State: closed - Opened by svevol almost 7 years ago - 3 comments

#10 - fix: use host user UID and GID

Pull Request - State: open - Opened by Midnighter almost 7 years ago - 1 comment

#9 - Permission denied when running the docker image

Issue - State: open - Opened by Midnighter almost 7 years ago - 4 comments

#8 - Dev

Pull Request - State: closed - Opened by psalvy almost 7 years ago - 1 comment

#7 - refactor: run scripts with bash

Pull Request - State: closed - Opened by Midnighter almost 7 years ago - 12 comments

#6 - Dev

Pull Request - State: closed - Opened by psalvy almost 7 years ago - 1 comment

#5 - CPLEX binaries should not be mandatory for Docker build

Issue - State: closed - Opened by psalvy almost 7 years ago - 6 comments
Labels: bug

#4 - Thermo DB as SQLite

Issue - State: open - Opened by Midnighter almost 7 years ago - 1 comment

#3 - SEED identifiers in thermo DB

Issue - State: open - Opened by Midnighter almost 7 years ago

#2 - Unable to open Matlab models

Issue - State: closed - Opened by Midnighter almost 7 years ago - 2 comments

#1 - Adding write_matlab_model + improved tests

Pull Request - State: closed - Opened by realLCSB over 7 years ago