Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / EGA-archive/ega-download-client issues and pull requests

#225 - pyEGA3 : 404 Client Error

Issue - State: closed - Opened by aydzhouyuan 23 days ago - 1 comment
Labels: bug

#224 - Cannot connect to server

Issue - State: closed - Opened by Rane90 3 months ago
Labels: bug

#222 - EE-2809 Check that the version file and git tag are the same

Pull Request - State: closed - Opened by aaclan-ebi 3 months ago

#220 - EE-2859 Add a readme for development

Pull Request - State: closed - Opened by aaclan-ebi 4 months ago

#219 - potential tqdm issue

Issue - State: open - Opened by maxim-h 5 months ago - 2 comments
Labels: bug

#218 - Download seems to pause when detaching from screen session

Issue - State: open - Opened by famosab 6 months ago - 6 comments
Labels: bug

#217 - Function not implemented

Issue - State: open - Opened by hmkim 7 months ago
Labels: bug

#216 - Problem When Downloading Files From EGA Using PyEGA3

Issue - State: open - Opened by caozilongsupper 8 months ago - 1 comment
Labels: bug

#215 - Issue with Dataset Visibility in PyEGA3

Issue - State: closed - Opened by zhaowsong 8 months ago - 1 comment
Labels: bug

#214 - Md5 mismatch

Issue - State: open - Opened by BrendaLee1 8 months ago
Labels: bug

#213 - Cannot Download authorized dataset

Issue - State: closed - Opened by farhan-lab 8 months ago - 2 comments

#212 - EE-2785 Fix package job

Pull Request - State: closed - Opened by aaclan-ebi 8 months ago

#211 - EE-2785 Pass user_id in the stats request

Pull Request - State: closed - Opened by aaclan-ebi 8 months ago

#210 - This ticket has been untaken by ega-rt-support.

Issue - State: closed - Opened by antonkratz 9 months ago - 1 comment
Labels: bug

#209 - [Server Problem] almost impossible to read from server connection

Issue - State: closed - Opened by TTTPOB 9 months ago
Labels: bug

#208 - The website `https://ega-archive.org/` is currently down ?

Issue - State: closed - Opened by snijesh 9 months ago - 1 comment

#207 - Download not working even with test data

Issue - State: closed - Opened by mukamel-lab 10 months ago - 2 comments
Labels: bug

#206 - 'Remote end closed connection without response' and other issues

Issue - State: open - Opened by antonkratz 10 months ago - 26 comments
Labels: bug

#205 - upgrade psutil requirement to 5.6.7

Pull Request - State: open - Opened by AndreJesusBrito 11 months ago

#204 - Cannot connect to server

Issue - State: closed - Opened by clai725 11 months ago - 4 comments
Labels: bug

#203 - Download stuck at 0%

Issue - State: closed - Opened by antonkratz 11 months ago - 12 comments
Labels: bug

#202 - EE-2785 Post stats to file distribution stats endpoint

Pull Request - State: closed - Opened by aaclan-ebi 11 months ago

#200 - Alternative to pyega3 ?

Issue - State: closed - Opened by PFRoux 12 months ago - 4 comments
Labels: bug

#199 - Repeated aborted connections - forcibly closed.

Issue - State: closed - Opened by JamesLeeLab 12 months ago - 11 comments
Labels: bug

#198 - Bump requests from 2.26.0 to 2.31.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#197 - [Errno 111] Connection refused - Docker

Issue - State: closed - Opened by bertagayete about 1 year ago - 1 comment
Labels: bug

#196 - Memory leak in client

Issue - State: closed - Opened by s-andrews about 1 year ago - 1 comment
Labels: bug

#195 - md5 check fails 2 times

Issue - State: open - Opened by b-lac over 1 year ago - 7 comments
Labels: bug

#194 - speed up the file checking process while resuming the download

Pull Request - State: open - Opened by chiangtw over 1 year ago

#193 - Cannot download any more - Invalid username, password or secret key

Issue - State: closed - Opened by jakalssj3 over 1 year ago - 17 comments
Labels: bug

#190 - "AttributeError: __enter__"

Issue - State: open - Opened by sunnaa0423 over 1 year ago - 4 comments
Labels: bug

#189 - EE-2650 Retry downloading the slice file if there is slice temp file

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago - 3 comments

#188 - EE-2467 Add functional tests for htsget

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago - 2 comments

#187 - Incorrect slice range requested to API when restarting from a partial download

Issue - State: closed - Opened by bioruffo over 1 year ago - 3 comments
Labels: bug

#186 - added file ID to messages

Pull Request - State: closed - Opened by bioruffo over 1 year ago

#185 - EE-2630 Add dataset download in functional tests

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago

#184 - Downloading slice of BAM recognized as complete but BAM download is incomplete

Issue - State: open - Opened by JasperO98 over 1 year ago - 9 comments
Labels: bug

#183 - Error downloading data - md5 values do not match

Issue - State: closed - Opened by ccruizm over 1 year ago - 13 comments
Labels: bug

#182 - EE-2630 Set fileStatus in file metadata json from new data api

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago

#181 - Complete download without downloading any file

Issue - State: closed - Opened by FlyPythons over 1 year ago - 5 comments
Labels: bug

#180 - EE-2619 Update PyPI description

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago

#179 - EE-2600 Add BCF and VCF to the format argument

Pull Request - State: closed - Opened by andresfsilva over 1 year ago

#178 - EE-2602 Upgrade htsget and pass session-id header from htsget.get

Pull Request - State: closed - Opened by aaclan-ebi over 1 year ago - 3 comments

#177 - Error 104: Connection reset by peer

Issue - State: closed - Opened by AnnaK135 over 1 year ago - 1 comment
Labels: service

#176 - Long waiting time between authentication and begin of operation (e.g. download)

Issue - State: closed - Opened by Tjorbenn over 1 year ago - 5 comments
Labels: service

#175 - PyEGA downloads one chunk and reports download is complete

Issue - State: closed - Opened by JasperO98 over 1 year ago - 1 comment
Labels: service

#174 - Download Issues

Issue - State: closed - Opened by ksarathbabu almost 2 years ago - 1 comment
Labels: service

#173 - requests.exceptions.RetryError

Issue - State: closed - Opened by Feng-Zhang almost 2 years ago - 6 comments
Labels: service

#172 - IndexFileId not found even though it's available

Issue - State: closed - Opened by JasperO98 almost 2 years ago
Labels: bug

#171 - Server stability is shockingly bad

Issue - State: closed - Opened by Nusob888 almost 2 years ago - 2 comments
Labels: service

#170 - Adjustments to make pyega3 compatible with the new file distribution API

Pull Request - State: closed - Opened by aaclan-ebi almost 2 years ago - 2 comments

#169 - Invalid username, password or secret key. 504 Server Error, even with the test user.

Issue - State: closed - Opened by migrau almost 2 years ago - 10 comments
Labels: service

#167 - Error while downloading the dataset

Issue - State: closed - Opened by alkurowska almost 2 years ago - 5 comments
Labels: service

#166 - ega-openid-connect-server returns 400 error on bad credentials

Issue - State: closed - Opened by delocalizer almost 2 years ago - 1 comment
Labels: bug, enhancement

#165 - Client should retry when authentication issue is server-side

Issue - State: closed - Opened by delocalizer almost 2 years ago - 1 comment
Labels: bug, enhancement

#164 - EE-1405 Python client support for new Data API

Pull Request - State: closed - Opened by afoix almost 2 years ago

#163 - Allow separate data and metadata URIs

Pull Request - State: closed - Opened by afoix almost 2 years ago

#162 - Invalid username, password or secret key

Issue - State: closed - Opened by hw538 about 2 years ago - 9 comments
Labels: service

#161 - EE-2310 Include version file in the package

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago

#160 - Ee 2310 add version command

Pull Request - State: closed - Opened by CsabaHalmagyi about 2 years ago

#159 - EE-2450 Exit with failure code 1 when there is an exception in executing command

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago - 2 comments

#158 - EE-2426 Retry GET json to retry GET file metadata HTTP 500 error

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago

#157 - Exit code 0 but "Could not communicate with the EGA repository because of an error on the server"

Issue - State: closed - Opened by stsergbg about 2 years ago - 5 comments
Labels: bug

#156 - Please return --saveto option

Issue - State: closed - Opened by stsergbg about 2 years ago
Labels: enhancement

#155 - EE-2418 Run functional tests in the pipeline

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago - 1 comment

#154 - EE-2375 Fix fresh install

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago

#153 - EE-2375 Fix version log deployment

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago

#152 - EE-2375 Fix cli version in the logging

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago - 2 comments

#151 - Terrible download experience. Infeasible to download datasets. Multiple errors while downloading datasets.

Issue - State: closed - Opened by Beiusxzw about 2 years ago - 12 comments
Labels: service

#150 - EE-2375 Use retry policy for requests

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago - 2 comments

#149 - EE-2375 Reuse valid file slices on retries

Pull Request - State: closed - Opened by aaclan-ebi about 2 years ago

#148 - Preliminary fix for partial download resume functionality

Pull Request - State: closed - Opened by YourePrettyGood about 2 years ago - 1 comment

#147 - EGA client not able to download all the files within a dataset

Issue - State: closed - Opened by chriss1313 over 2 years ago - 4 comments
Labels: bug, service

#146 - Display correct error message instead of "Invalid username, password or secret key" for fresh accounts

Issue - State: closed - Opened by ghuls over 2 years ago - 5 comments
Labels: enhancement

#145 - filaled to download

Issue - State: closed - Opened by jianguozhouzunyimedicaluniversity over 2 years ago - 9 comments
Labels: service

#144 - issue: “Invalid Username, Password, or Secret Key”

Issue - State: closed - Opened by toddey over 2 years ago - 1 comment
Labels: service

#143 - HTTP Error

Issue - State: closed - Opened by ZhangXiangye over 2 years ago - 1 comment
Labels: general

#142 - Fix type str to int because chaneg son python version

Pull Request - State: closed - Opened by afoix over 2 years ago
Labels: bug

#141 - Invalid Username, Password, or Secret Key

Issue - State: closed - Opened by mdbarnesUCSD over 2 years ago - 1 comment
Labels: service

#140 - Download genomic region using BED file as input

Issue - State: closed - Opened by hubentu over 2 years ago - 3 comments
Labels: enhancement

#139 - file_from and file_length type wrong for resume to work

Issue - State: closed - Opened by FlyPythons over 2 years ago - 1 comment
Labels: bug

#138 - EE-2210: explained transition from --saveto to --output-dir.

Pull Request - State: closed - Opened by bela-juhasz over 2 years ago

#136 - Having trouble running test dataset

Issue - State: closed - Opened by jalalsiddiqui over 2 years ago - 2 comments
Labels: service

#133 - EE-2115 Add improved handling of our 500 (internal server) errors

Pull Request - State: closed - Opened by afoix almost 3 years ago
Labels: enhancement

#132 - EE-2172 Add option to print log in JSON format

Pull Request - State: closed - Opened by afoix almost 3 years ago
Labels: enhancement

#130 - EE-1445 Warning if users try to download more data than they have free space

Pull Request - State: closed - Opened by afoix almost 3 years ago
Labels: enhancement

#129 - ISSUE-127 This closes #127 fixing the regex

Pull Request - State: closed - Opened by afoix almost 3 years ago

#128 - Completed slices aren't checked in download_file_slice

Issue - State: closed - Opened by torptube almost 3 years ago - 4 comments
Labels: bug

#127 - Regular expression is too greedy for resume to work

Issue - State: closed - Opened by torptube almost 3 years ago
Labels: bug

#126 - EE-1421 pyega3 notify the user if required ports are closed

Pull Request - State: closed - Opened by afoix almost 3 years ago