Ecosyste.ms: Issues

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GitHub / EBI-Metagenomics/emg-toolkit issues and pull requests

#34 - Bump black from 24.1.1 to 24.3.0

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#33 - Bugfix: handle bad responses from ENA browser API

Pull Request - State: closed - Opened by SandyRogers 7 months ago

#32 - Bug fix - empty tags are breaking original metadata

Pull Request - State: closed - Opened by mberacochea 8 months ago

#31 - Add an "-resume" option for the bulk_downloader

Issue - State: open - Opened by mberacochea almost 2 years ago
Labels: enhancement

#30 - dowload metadata error

Issue - State: open - Opened by sarpiens over 2 years ago - 6 comments
Labels: bug, enhancement

#29 - bulk download metadata

Issue - State: closed - Opened by snayfach over 2 years ago - 3 comments

#27 - Limit on returned results for `sequence_search`

Issue - State: closed - Opened by ay-amityadav about 3 years ago - 1 comment

#26 - Backmerge master into dev

Pull Request - State: closed - Opened by SandyRogers about 3 years ago

#25 - Remove Travis CI and switch to GitHub Actions. Fix tests.

Pull Request - State: closed - Opened by SandyRogers about 3 years ago

#24 - emg-toolkit as a python method

Issue - State: closed - Opened by matinnuhamunada about 3 years ago - 3 comments

#23 - ENA metadata is missing the sample_alias

Issue - State: open - Opened by mberacochea over 3 years ago
Labels: question

#21 - Failed to download metadata

Issue - State: closed - Opened by matrs over 3 years ago - 4 comments

#20 - Dev

Pull Request - State: closed - Opened by mberacochea over 3 years ago

#19 - Bulk Download metadata storage.

Pull Request - State: closed - Opened by mberacochea over 3 years ago

#18 - Update sequence search

Pull Request - State: closed - Opened by mberacochea over 3 years ago

#17 - Update sequence search

Pull Request - State: closed - Opened by emilhaegglund over 3 years ago - 2 comments

#16 - Can't download metadata, 500 error

Issue - State: closed - Opened by jacob-Iuo over 3 years ago - 1 comment

#15 - Bulk download failing to download large numbers of files

Issue - State: closed - Opened by tomblaze almost 4 years ago - 2 comments

#14 - Update bulk_download.py

Pull Request - State: closed - Opened by tomblaze almost 4 years ago

#13 - Fix bug with bulk_downloader.

Pull Request - State: closed - Opened by mberacochea almost 4 years ago

#12 - Bugfix not paginating downloads

Pull Request - State: closed - Opened by mberacochea almost 4 years ago

#11 - Data not being found

Issue - State: open - Opened by JahanRahman about 4 years ago - 1 comment
Labels: bug

#10 - Add support for private data sets

Issue - State: open - Opened by mberacochea about 4 years ago
Labels: enhancement

#9 - Fixes for #8, #5, #6, #7

Pull Request - State: closed - Opened by mberacochea about 4 years ago - 1 comment

#8 - error running example

Issue - State: closed - Opened by snayfach about 4 years ago - 1 comment

#7 - Bulk download issue with result pagination

Issue - State: open - Opened by apduncan over 4 years ago - 2 comments
Labels: bug

#6 - mg-toolkit for confidential MGnify study

Issue - State: closed - Opened by jmcelh almost 5 years ago - 2 comments
Labels: bug

#5 - Overwrites already downloaded data.

Issue - State: closed - Opened by casperp almost 6 years ago - 4 comments
Labels: enhancement, Bulk download

#4 - bump version

Pull Request - State: closed - Opened by ghost almost 6 years ago

#3 - Applied fix to support paginated bulk download.

Pull Request - State: closed - Opened by mscheremetjew almost 6 years ago - 1 comment

#2 - Emg 693

Pull Request - State: closed - Opened by mscheremetjew about 6 years ago - 1 comment

#1 - bulk download

Pull Request - State: closed - Opened by ghost about 6 years ago