Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / DrylandEcology/rSFSTEP2 issues and pull requests
#258 - Update siteparam.in files that are part of the CO2 effects on transpiration to match updated files in SOILWAT2 master
Issue -
State: open - Opened by kpalmqui 11 months ago
- 1 comment
Labels: bug
#257 - Implement enhanced biomass under elevated CO2 via adjustment of bvt (plant-level WUE)
Issue -
State: closed - Opened by kpalmqui about 1 year ago
- 1 comment
Labels: enhancement
#256 - Implement reduced stomatal conductance in SOILWAT2 based on average CO2 of each RCP-time period combination
Issue -
State: closed - Opened by kpalmqui about 1 year ago
- 1 comment
Labels: enhancement
#255 - Update default bvt values, issue #254
Pull Request -
State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement
#254 - Update default bvt values reflecting functional type specific WUE
Issue -
State: closed - Opened by kpalmqui over 1 year ago
- 1 comment
Labels: enhancement
#253 - Update rgroup inputs to reflect new column 'live_biomass'
Issue -
State: closed - Opened by kpalmqui over 1 year ago
- 1 comment
Labels: enhancement
#252 - Update species pestab parameters in for annual species
Issue -
State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement
#251 - Update sample.sh to use correct modules on supercomputer
Issue -
State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement
#250 - Update rSOILWAT2 check in Main.R to the latest version v5.3.1
Issue -
State: closed - Opened by kpalmqui about 2 years ago
Labels: enhancement
#249 - Create flag and associated code to turn off C4 grasses under future conditions if current climate is not suitable
Issue -
State: open - Opened by kpalmqui about 2 years ago
Labels: enhancement
#248 - Scale eind dynamically based on climate-driven relative abundance
Issue -
State: closed - Opened by kpalmqui about 2 years ago
- 1 comment
Labels: enhancement
#247 - remove rm stepwat_test from cloneSTEPWAT2.sh
Issue -
State: closed - Opened by kpalmqui over 2 years ago
Labels: enhancement
#246 - Add a check to CallSTEPWAT2.R to see if there an existing output database and delete if true
Issue -
State: closed - Opened by kpalmqui over 2 years ago
Labels: enhancement
#245 - Update grepl statements to ensure an exact condition is met (i.e. site ID), rather than contains this site ID
Issue -
State: closed - Opened by kpalmqui over 3 years ago
- 1 comment
Labels: bug
#244 - STEPWAT2 simulation years is hard-coded to 300 in CallSTEPWAT2.R and data compilation will fail if simulation years is not equal to 300
Issue -
State: closed - Opened by kpalmqui over 3 years ago
- 1 comment
Labels: bug
#243 - Site-specific inputs for latitude, altitude, slope, and aspect
Issue -
State: open - Opened by kpalmqui about 4 years ago
Labels: enhancement
#242 - Cheatgrass-wildfire feedback loop is not an option within InputData_Rgroup.csv
Issue -
State: open - Opened by kpalmqui over 4 years ago
Labels: enhancement
#241 - Bugfix 240 cheatgrassrelabun
Pull Request -
State: closed - Opened by kpalmqui over 4 years ago
Labels: bug
#240 - Cheatgrass space is set to 0 under future conditions due to issue in existing cheatgrass relative abundance equation
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 6 comments
Labels: bug
#239 - Update equation that dynamically scales the relative abundance of cheatgrass to require both conditions
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#238 - Update cheatgrass fire parameters within rgroup_template.in
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: invalid
#237 - Update assignsiteid.py once feature_phenology_biomass_scaling is merged into streamline_output
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#236 - RCP and YEARS columns are NULL for future climate scenarios in all sw_daily Tables in SQLite database
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: bug
#235 - Site ID is inserted a floating point instead of an integer in SQLite Tables
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement, invalid
#234 - Change Year from calendar year to simulation year in sw2_monthly and sw2_yearly SQLite Tables
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#233 - New algorithm for scaling biomass fractions coming out of scale_phenology
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#232 - Raw daily output is inserted into SQLite output database instead of aggregated daily output
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: invalid
#231 - Remove additional files from STEPWAT2 after the make in cloneSTEPWAT2.sh
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#230 - Runs fail on Teton due to wrong file path in sample.sh
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: bug
#229 - Remove unused argument na.rm=T from dbW_estimate_WGen_coefs in MarkovWeatherFileGenerator.R
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: invalid
#228 - Add additional call to scale_phenology in Main.R
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#227 - Update scale_phenology function to expect a new argument: default phenological activity values
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#226 - Update default species parameters
Pull Request -
State: closed - Opened by kpalmqui over 4 years ago
Labels: enhancement
#225 - Update default species parameters for "all/"fixed1" site/treatment in InputData_Species.csv
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#224 - New algorithm for rescaling % live fractions returned by scale_phenology
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 3 comments
Labels: enhancement
#223 - Calculation of a new variable - correlation between default temperature and default phenological activity to be passed into updated function scale_phenology
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#222 - New proposed default litter values for cheatgrass
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: invalid
#221 - Streamline output
Pull Request -
State: closed - Opened by chaukap over 4 years ago
#220 - Site SQLite databases are labeled according to their R_program folder not their site ID
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 3 comments
Labels: invalid
#219 - Update transpiration coefficients based on Schenk & Jackson 2003
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 2 comments
Labels: enhancement
#218 - Create shell scripts to call compareFiles.R on a computing cluster
Issue -
State: closed - Opened by chaukap over 4 years ago
- 13 comments
#217 - Update default values of var and pseed for annual species in species_template.in
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 2 comments
Labels: invalid
#216 - Error with multiple threads writing to single SQLite database
Issue -
State: closed - Opened by chaukap over 4 years ago
- 23 comments
Labels: bug
#215 - Remove redundancies in rSFSTEP2 flow
Issue -
State: closed - Opened by chaukap over 4 years ago
- 7 comments
#214 - Update default trco_shrub parameters in InputData_SoilLayers.csv
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement
#213 - Remove unnecessary files that are part of STEPWAT2 in cloneSTEPWAT2.sh after STEPWAT2 is compiled in rSFSTEP2
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: enhancement, high priority
#212 - Merge fg_specificity_sxw into the phenology scaling branch
Pull Request -
State: closed - Opened by chaukap over 4 years ago
- 6 comments
#211 - Increase biomass fraction values for most functional types
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 1 comment
Labels: invalid
#210 - Adjust %live fractions for some STEPPE functional types
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 3 comments
Labels: enhancement
#209 - merge master into fg_specificity_sxw
Pull Request -
State: closed - Opened by chaukap over 4 years ago
#208 - Merge master into phenology scaling branch
Pull Request -
State: closed - Opened by chaukap over 4 years ago
#207 - merge document_rSW2utils_dependency into master
Pull Request -
State: closed - Opened by chaukap over 4 years ago
Labels: documentation
#206 - remove line "rm DLM_change_log.txt" from cloneSTEPWAT2.sh
Issue -
State: closed - Opened by chaukap over 4 years ago
#205 - Update README.md to include rSW2utils dependency
Issue -
State: closed - Opened by chaukap over 4 years ago
Labels: documentation
#204 - Merge feature_phenology_biomass_scaling into fg_specificity_sxw
Pull Request -
State: closed - Opened by chaukap over 4 years ago
#203 - Update phenological activity values in InputData_phenology.csv so they no longer need to sum to 1.0
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 3 comments
Labels: enhancement, high priority
#202 - Remove scaling of phenological activity values to sum to 1.0
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 2 comments
Labels: enhancement, high priority
#201 - Additional constraint on biomass fractions so peak value is fixed at 1.0
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 16 comments
Labels: enhancement, high priority
#200 - Adjust compareFile.R to account for rgroup-specific litter
Issue -
State: closed - Opened by chaukap over 4 years ago
#199 - Scale litter for each rgroup
Issue -
State: closed - Opened by chaukap over 4 years ago
#198 - Make litter RGroup-specific in input CSV
Issue -
State: closed - Opened by chaukap over 4 years ago
#197 - Constrain litter, %live, and biomass fractions by the sum of the default fractions
Issue -
State: closed - Opened by kpalmqui over 4 years ago
- 4 comments
Labels: enhancement
#196 - Update format of % live Figures scenarios are spread across Figures similiar to biomass and litter Figures
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
Labels: enhancement
#195 - Update default monthly temperatures based on median monthly temperatures across all 898 big sagebrush sites
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 2 comments
Labels: enhancement
#194 - Derived litter fractions and biomass fractions exceed 1.0
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 2 comments
Labels: bug, high priority
#193 - Adjust succulent % live input values in InputData_PctLive
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 1 comment
Labels: invalid
#192 - Merge Windows compatibility into master
Pull Request -
State: closed - Opened by kpalmqui almost 5 years ago
Labels: documentation
#191 - Include BVT values (biomass & transpiration) for each RGroup within InputData_Rgroup.csv
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 2 comments
Labels: enhancement
#190 - New panels in phenology/biomass/%live/litter figures that show default monthly temperatures along with monthly temperatures utilized to derive values
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 3 comments
Labels: enhancement, high priority
#189 - Reset STEPWAT2 branch to master
Issue -
State: closed - Opened by chaukap almost 5 years ago
- 1 comment
#188 - Clone fg_specificity_sxw branch of STEPWAT2.
Issue -
State: closed - Opened by chaukap almost 5 years ago
#187 - Error in scale_phenology(values_to_scale, sw_weatherList, monthly.temperature, : object 'n_sites' not found
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 4 comments
Labels: bug, high priority
#186 - Merge master into feature_phenology_biomass_scaling
Pull Request -
State: closed - Opened by chaukap almost 5 years ago
#185 - Merge master into bugfix_gridded_code_compatability
Pull Request -
State: closed - Opened by chaukap almost 5 years ago
#184 - Replace adjBiom_by_temp with adj_phenology_by_temp
Issue -
State: closed - Opened by chaukap almost 5 years ago
#183 - Merge bugfix_gridded_code_compatability into master
Pull Request -
State: closed - Opened by chaukap almost 5 years ago
- 1 comment
#182 - Add VW to species_template.in
Issue -
State: closed - Opened by chaukap almost 5 years ago
Labels: bug
#181 - Update README file to reflect new functionality that compares input files generated on the fly
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 2 comments
Labels: enhancement
#180 - Merge master into windows_compatibility
Pull Request -
State: closed - Opened by chaukap almost 5 years ago
- 1 comment
#179 - Unnecessary spaces in pctlive file names
Issue -
State: closed - Opened by chaukap almost 5 years ago
Labels: bug
#178 - Change column header from "Space Value" to "Delta Space" in space.csv
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
Labels: enhancement
#177 - Make Figures that show how space is scaled based on current and future climate
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 3 comments
Labels: enhancement
#176 - Remove file comparisons for all parameters in rgroup.in file except space
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
Labels: enhancement
#175 - Add "Current" black line to all graphics
Issue -
State: closed - Opened by kpalmqui almost 5 years ago
- 4 comments
Labels: enhancement
#174 - Streamline the rSFSTEP2 interface
Issue -
State: open - Opened by chaukap almost 5 years ago
#173 - Create shell script to compare all derived files at once.
Issue -
State: closed - Opened by chaukap almost 5 years ago
Labels: enhancement
#172 - Merge feature_168 into feature_phenology_biomass_scaling
Pull Request -
State: closed - Opened by chaukap about 5 years ago
#168 - Create function to compare generated .in files
Issue -
State: closed - Opened by chaukap about 5 years ago
- 4 comments
Labels: enhancement
#167 - Merge master into feature_153
Pull Request -
State: closed - Opened by chaukap about 5 years ago
#166 - Feature phenology biomass scaling
Pull Request -
State: closed - Opened by chaukap about 5 years ago
- 6 comments
#159 - Dynamically scale phenology, biomass, litter, and percent live based on climate
Issue -
State: closed - Opened by kpalmqui about 5 years ago
- 13 comments
Labels: enhancement
#155 - Merge feature_153_species_reordering into master
Pull Request -
State: closed - Opened by chaukap about 5 years ago
- 1 comment
#154 - Reset STEPWAT2 branch to master
Issue -
State: closed - Opened by chaukap about 5 years ago
- 1 comment
#153 - Address reordering of species.in file
Issue -
State: closed - Opened by chaukap about 5 years ago
#152 - Instructions to clone rSFSTEP2 are missing from README.md
Issue -
State: closed - Opened by kpalmqui about 5 years ago
Labels: invalid
#148 - Document how to run rSFSTEP2 on Windows
Issue -
State: closed - Opened by fdpierson over 5 years ago
- 20 comments
#147 - Properly handle paths with spaces
Issue -
State: closed - Opened by fdpierson over 5 years ago
- 3 comments
#76 - Poor memory usage
Issue -
State: closed - Opened by chaukap almost 6 years ago
- 2 comments
Labels: bug, high priority
#56 - Derive climate-cheatgrass equation using raw data provided in Brummer et al. 2016
Issue -
State: closed - Opened by kpalmqui almost 6 years ago
- 16 comments
Labels: enhancement, in progress, high priority
#12 - Overhaul how outputs from multiple sites are stored
Issue -
State: closed - Opened by kpalmqui about 7 years ago
- 2 comments
Labels: enhancement