Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / DrylandEcology/rSFSTEP2 issues and pull requests

#257 - Implement enhanced biomass under elevated CO2 via adjustment of bvt (plant-level WUE)

Issue - State: closed - Opened by kpalmqui about 1 year ago - 1 comment
Labels: enhancement

#256 - Implement reduced stomatal conductance in SOILWAT2 based on average CO2 of each RCP-time period combination

Issue - State: closed - Opened by kpalmqui about 1 year ago - 1 comment
Labels: enhancement

#255 - Update default bvt values, issue #254

Pull Request - State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement

#254 - Update default bvt values reflecting functional type specific WUE

Issue - State: closed - Opened by kpalmqui over 1 year ago - 1 comment
Labels: enhancement

#253 - Update rgroup inputs to reflect new column 'live_biomass'

Issue - State: closed - Opened by kpalmqui over 1 year ago - 1 comment
Labels: enhancement

#252 - Update species pestab parameters in for annual species

Issue - State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement

#251 - Update sample.sh to use correct modules on supercomputer

Issue - State: closed - Opened by kpalmqui over 1 year ago
Labels: enhancement

#250 - Update rSOILWAT2 check in Main.R to the latest version v5.3.1

Issue - State: closed - Opened by kpalmqui about 2 years ago
Labels: enhancement

#248 - Scale eind dynamically based on climate-driven relative abundance

Issue - State: closed - Opened by kpalmqui about 2 years ago - 1 comment
Labels: enhancement

#247 - remove rm stepwat_test from cloneSTEPWAT2.sh

Issue - State: closed - Opened by kpalmqui over 2 years ago
Labels: enhancement

#243 - Site-specific inputs for latitude, altitude, slope, and aspect

Issue - State: open - Opened by kpalmqui about 4 years ago
Labels: enhancement

#242 - Cheatgrass-wildfire feedback loop is not an option within InputData_Rgroup.csv

Issue - State: open - Opened by kpalmqui over 4 years ago
Labels: enhancement

#241 - Bugfix 240 cheatgrassrelabun

Pull Request - State: closed - Opened by kpalmqui over 4 years ago
Labels: bug

#239 - Update equation that dynamically scales the relative abundance of cheatgrass to require both conditions

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#238 - Update cheatgrass fire parameters within rgroup_template.in

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: invalid

#237 - Update assignsiteid.py once feature_phenology_biomass_scaling is merged into streamline_output

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#235 - Site ID is inserted a floating point instead of an integer in SQLite Tables

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement, invalid

#234 - Change Year from calendar year to simulation year in sw2_monthly and sw2_yearly SQLite Tables

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#233 - New algorithm for scaling biomass fractions coming out of scale_phenology

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#232 - Raw daily output is inserted into SQLite output database instead of aggregated daily output

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: invalid

#231 - Remove additional files from STEPWAT2 after the make in cloneSTEPWAT2.sh

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#230 - Runs fail on Teton due to wrong file path in sample.sh

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: bug

#229 - Remove unused argument na.rm=T from dbW_estimate_WGen_coefs in MarkovWeatherFileGenerator.R

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: invalid

#228 - Add additional call to scale_phenology in Main.R

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#227 - Update scale_phenology function to expect a new argument: default phenological activity values

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#226 - Update default species parameters

Pull Request - State: closed - Opened by kpalmqui over 4 years ago
Labels: enhancement

#225 - Update default species parameters for "all/"fixed1" site/treatment in InputData_Species.csv

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#224 - New algorithm for rescaling % live fractions returned by scale_phenology

Issue - State: closed - Opened by kpalmqui over 4 years ago - 3 comments
Labels: enhancement

#222 - New proposed default litter values for cheatgrass

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: invalid

#221 - Streamline output

Pull Request - State: closed - Opened by chaukap over 4 years ago

#220 - Site SQLite databases are labeled according to their R_program folder not their site ID

Issue - State: closed - Opened by kpalmqui over 4 years ago - 3 comments
Labels: invalid

#219 - Update transpiration coefficients based on Schenk & Jackson 2003

Issue - State: closed - Opened by kpalmqui over 4 years ago - 2 comments
Labels: enhancement

#218 - Create shell scripts to call compareFiles.R on a computing cluster

Issue - State: closed - Opened by chaukap over 4 years ago - 13 comments

#217 - Update default values of var and pseed for annual species in species_template.in

Issue - State: closed - Opened by kpalmqui over 4 years ago - 2 comments
Labels: invalid

#216 - Error with multiple threads writing to single SQLite database

Issue - State: closed - Opened by chaukap over 4 years ago - 23 comments
Labels: bug

#215 - Remove redundancies in rSFSTEP2 flow

Issue - State: closed - Opened by chaukap over 4 years ago - 7 comments

#214 - Update default trco_shrub parameters in InputData_SoilLayers.csv

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement

#213 - Remove unnecessary files that are part of STEPWAT2 in cloneSTEPWAT2.sh after STEPWAT2 is compiled in rSFSTEP2

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: enhancement, high priority

#212 - Merge fg_specificity_sxw into the phenology scaling branch

Pull Request - State: closed - Opened by chaukap over 4 years ago - 6 comments

#211 - Increase biomass fraction values for most functional types

Issue - State: closed - Opened by kpalmqui over 4 years ago - 1 comment
Labels: invalid

#210 - Adjust %live fractions for some STEPPE functional types

Issue - State: closed - Opened by kpalmqui over 4 years ago - 3 comments
Labels: enhancement

#209 - merge master into fg_specificity_sxw

Pull Request - State: closed - Opened by chaukap over 4 years ago

#208 - Merge master into phenology scaling branch

Pull Request - State: closed - Opened by chaukap over 4 years ago

#207 - merge document_rSW2utils_dependency into master

Pull Request - State: closed - Opened by chaukap over 4 years ago
Labels: documentation

#206 - remove line "rm DLM_change_log.txt" from cloneSTEPWAT2.sh

Issue - State: closed - Opened by chaukap over 4 years ago

#205 - Update README.md to include rSW2utils dependency

Issue - State: closed - Opened by chaukap over 4 years ago
Labels: documentation

#204 - Merge feature_phenology_biomass_scaling into fg_specificity_sxw

Pull Request - State: closed - Opened by chaukap over 4 years ago

#203 - Update phenological activity values in InputData_phenology.csv so they no longer need to sum to 1.0

Issue - State: closed - Opened by kpalmqui over 4 years ago - 3 comments
Labels: enhancement, high priority

#202 - Remove scaling of phenological activity values to sum to 1.0

Issue - State: closed - Opened by kpalmqui over 4 years ago - 2 comments
Labels: enhancement, high priority

#201 - Additional constraint on biomass fractions so peak value is fixed at 1.0

Issue - State: closed - Opened by kpalmqui over 4 years ago - 16 comments
Labels: enhancement, high priority

#200 - Adjust compareFile.R to account for rgroup-specific litter

Issue - State: closed - Opened by chaukap over 4 years ago

#199 - Scale litter for each rgroup

Issue - State: closed - Opened by chaukap over 4 years ago

#198 - Make litter RGroup-specific in input CSV

Issue - State: closed - Opened by chaukap over 4 years ago

#197 - Constrain litter, %live, and biomass fractions by the sum of the default fractions

Issue - State: closed - Opened by kpalmqui over 4 years ago - 4 comments
Labels: enhancement

#195 - Update default monthly temperatures based on median monthly temperatures across all 898 big sagebrush sites

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 2 comments
Labels: enhancement

#194 - Derived litter fractions and biomass fractions exceed 1.0

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 2 comments
Labels: bug, high priority

#193 - Adjust succulent % live input values in InputData_PctLive

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 1 comment
Labels: invalid

#192 - Merge Windows compatibility into master

Pull Request - State: closed - Opened by kpalmqui almost 5 years ago
Labels: documentation

#191 - Include BVT values (biomass & transpiration) for each RGroup within InputData_Rgroup.csv

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 2 comments
Labels: enhancement

#189 - Reset STEPWAT2 branch to master

Issue - State: closed - Opened by chaukap almost 5 years ago - 1 comment

#188 - Clone fg_specificity_sxw branch of STEPWAT2.

Issue - State: closed - Opened by chaukap almost 5 years ago

#187 - Error in scale_phenology(values_to_scale, sw_weatherList, monthly.temperature, : object 'n_sites' not found

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 4 comments
Labels: bug, high priority

#186 - Merge master into feature_phenology_biomass_scaling

Pull Request - State: closed - Opened by chaukap almost 5 years ago

#185 - Merge master into bugfix_gridded_code_compatability

Pull Request - State: closed - Opened by chaukap almost 5 years ago

#184 - Replace adjBiom_by_temp with adj_phenology_by_temp

Issue - State: closed - Opened by chaukap almost 5 years ago

#183 - Merge bugfix_gridded_code_compatability into master

Pull Request - State: closed - Opened by chaukap almost 5 years ago - 1 comment

#182 - Add VW to species_template.in

Issue - State: closed - Opened by chaukap almost 5 years ago
Labels: bug

#181 - Update README file to reflect new functionality that compares input files generated on the fly

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 2 comments
Labels: enhancement

#180 - Merge master into windows_compatibility

Pull Request - State: closed - Opened by chaukap almost 5 years ago - 1 comment

#179 - Unnecessary spaces in pctlive file names

Issue - State: closed - Opened by chaukap almost 5 years ago
Labels: bug

#178 - Change column header from "Space Value" to "Delta Space" in space.csv

Issue - State: closed - Opened by kpalmqui almost 5 years ago
Labels: enhancement

#177 - Make Figures that show how space is scaled based on current and future climate

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 3 comments
Labels: enhancement

#176 - Remove file comparisons for all parameters in rgroup.in file except space

Issue - State: closed - Opened by kpalmqui almost 5 years ago
Labels: enhancement

#175 - Add "Current" black line to all graphics

Issue - State: closed - Opened by kpalmqui almost 5 years ago - 4 comments
Labels: enhancement

#174 - Streamline the rSFSTEP2 interface

Issue - State: open - Opened by chaukap almost 5 years ago

#173 - Create shell script to compare all derived files at once.

Issue - State: closed - Opened by chaukap almost 5 years ago
Labels: enhancement

#172 - Merge feature_168 into feature_phenology_biomass_scaling

Pull Request - State: closed - Opened by chaukap about 5 years ago

#168 - Create function to compare generated .in files

Issue - State: closed - Opened by chaukap about 5 years ago - 4 comments
Labels: enhancement

#167 - Merge master into feature_153

Pull Request - State: closed - Opened by chaukap about 5 years ago

#166 - Feature phenology biomass scaling

Pull Request - State: closed - Opened by chaukap about 5 years ago - 6 comments

#159 - Dynamically scale phenology, biomass, litter, and percent live based on climate

Issue - State: closed - Opened by kpalmqui about 5 years ago - 13 comments
Labels: enhancement

#155 - Merge feature_153_species_reordering into master

Pull Request - State: closed - Opened by chaukap about 5 years ago - 1 comment

#154 - Reset STEPWAT2 branch to master

Issue - State: closed - Opened by chaukap about 5 years ago - 1 comment

#153 - Address reordering of species.in file

Issue - State: closed - Opened by chaukap about 5 years ago

#152 - Instructions to clone rSFSTEP2 are missing from README.md

Issue - State: closed - Opened by kpalmqui about 5 years ago
Labels: invalid

#148 - Document how to run rSFSTEP2 on Windows

Issue - State: closed - Opened by fdpierson over 5 years ago - 20 comments

#147 - Properly handle paths with spaces

Issue - State: closed - Opened by fdpierson over 5 years ago - 3 comments

#76 - Poor memory usage

Issue - State: closed - Opened by chaukap almost 6 years ago - 2 comments
Labels: bug, high priority

#56 - Derive climate-cheatgrass equation using raw data provided in Brummer et al. 2016

Issue - State: closed - Opened by kpalmqui almost 6 years ago - 16 comments
Labels: enhancement, in progress, high priority

#12 - Overhaul how outputs from multiple sites are stored

Issue - State: closed - Opened by kpalmqui about 7 years ago - 2 comments
Labels: enhancement