Dowell-Lab/TFEA issues and pull requests

#32 - Bump scipy from 1.3.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#31 - V1.1.5 dockerfix

Pull Request - State: open - Opened by jdrubin91 about 1 year ago

#30 - Bump ujson from 1.35 to 5.4.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#29 - Bump numpy from 1.16.4 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#28 - error with meme file format

Issue - State: open - Opened by archanabhardwaj about 2 years ago - 1 comment

#27 - Bump ujson from 1.35 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#26 - Error building Docker image

Issue - State: open - Opened by malemanyc about 2 years ago

#25 - Cannot open hg38.fa downloaded from UCSC

Issue - State: open - Opened by c2b2pss over 2 years ago

#24 - Installtion issue with Python 3.9 #24 -- pysam fails

Issue - State: open - Opened by c2b2pss over 2 years ago

#23 - Installation issue on 3.9

Issue - State: open - Opened by KrotosBenjamin over 2 years ago - 1 comment

#22 - Converting rank to fasta fails

Issue - State: open - Opened by fisst over 2 years ago

#21 - Error running TFEA

Issue - State: closed - Opened by anu-bioinfo over 2 years ago

#20 - CPU usage

Issue - State: open - Opened by fisst over 2 years ago - 1 comment

#19 - Error while running TFEA

Issue - State: closed - Opened by anu-bioinfo over 2 years ago

#18 - TF enrichment analysis of different tissues

Issue - State: open - Opened by tzhu-bio over 2 years ago

#17 - Execution errors after "Combining regions".

Issue - State: open - Opened by JonatanFernandez almost 3 years ago - 4 comments

#16 - TFEA runtime and output differs depending on order of conditions

Issue - State: open - Opened by santiago-es almost 3 years ago - 1 comment

#15 - Missing plots in individual TF results HTML pages

Issue - State: open - Opened by nlaillerbms over 3 years ago - 1 comment

#14 - TFEA fails with JASPAR database input: `ValueError: Inputs must not be empty`

Issue - State: open - Opened by lukauskas over 3 years ago

#13 - TFEA output is non-deterministic

Issue - State: open - Opened by lukauskas over 3 years ago - 1 comment

#12 - Clarify the format of `ranked_file`

Issue - State: open - Opened by lukauskas over 3 years ago - 1 comment

#11 - added supplemental figure jupyter notebooks

Pull Request - State: closed - Opened by rutendos about 4 years ago

#10 - Add documentation for container usage.

Pull Request - State: closed - Opened by zmaas about 4 years ago

#9 - Fix html output

Pull Request - State: closed - Opened by zmaas about 4 years ago - 2 comments

#8 - batch flag not passing batch names to DESeq.R script

Issue - State: closed - Opened by joefranchesco about 4 years ago - 1 comment

#7 - Add Dockerfile