Ecosyste.ms: Issues

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GitHub / Dowell-Lab/FStitch issues and pull requests

#19 - updated version to 1.1.1 to reflect last commit changes

Pull Request - State: closed - Opened by magruca over 5 years ago

#18 - More explicit error report messages in train/segment modules

Pull Request - State: closed - Opened by magruca over 5 years ago

#17 - bidir code cleanup, added some error catching

Pull Request - State: closed - Opened by magruca over 5 years ago

#16 - request validated data, training and output files

Issue - State: open - Opened by sandymartin almost 6 years ago - 3 comments

#15 - fstitch bidir failing when segment file is empty

Issue - State: closed - Opened by magruca almost 6 years ago - 1 comment

#14 - add coverage calculation to bidir module

Issue - State: open - Opened by magruca almost 6 years ago
Labels: enhancement

#13 - fstitch bidir module failing on some versions of refseq files due to scaffolding chromosomes

Issue - State: closed - Opened by magruca about 6 years ago - 1 comment
Labels: bug, doing

#12 - fstitch sometimes not printing data from certain chromosomes

Issue - State: open - Opened by magruca about 6 years ago - 1 comment
Labels: bug, to do

#11 - "report" option does not work

Issue - State: open - Opened by magruca about 6 years ago
Labels: bug, low priority, to do

#10 - split concatenated bedfile such that we only have to run one command of segment

Issue - State: open - Opened by magruca about 6 years ago - 1 comment
Labels: extension, low priority

#9 - "It appears that the training file provided was not created for negative strand data"

Issue - State: open - Opened by magruca about 6 years ago
Labels: bug, low priority, to do

#8 - Ignacio FStitch error -- "provided vector X is empty"

Issue - State: open - Opened by magruca about 6 years ago
Labels: bug, to do

#7 - Documentation -- update, fix, remove

Issue - State: closed - Opened by magruca about 6 years ago - 4 comments
Labels: bug, doing, to do

#6 - -chip argument

Issue - State: open - Opened by magruca about 6 years ago
Labels: bug, to do

#5 - Mysterious eRNA module

Issue - State: closed - Opened by magruca about 6 years ago - 2 comments
Labels: extension, low priority, to do

#4 - Large differences in LLR calculated values between bedGraph formatted files

Issue - State: open - Opened by magruca about 6 years ago - 1 comment
Labels: bug, to do, has attachment

#3 - FStitch still choking on 0 coverage values in bedGraph in segment (but not train)

Issue - State: open - Opened by magruca about 6 years ago - 1 comment
Labels: bug, to do

#2 - Need to fix strand issue in "segment" module

Issue - State: closed - Opened by magruca about 6 years ago - 3 comments
Labels: bug, to do

#1 - Need to fix strand option in train

Issue - State: open - Opened by magruca about 6 years ago
Labels: bug, to do