Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Doodleverse/segmentation_gym issues and pull requests

#145 - Issue with Installation

Issue - State: closed - Opened by rtmccune 8 months ago - 2 comments

#144 - Update README.md

Pull Request - State: closed - Opened by dbuscombe-usgs 9 months ago - 3 comments

#142 - Update README.md

Pull Request - State: closed - Opened by dbuscombe-usgs 9 months ago - 3 comments

#141 - feature request: model calibration

Issue - State: open - Opened by dbuscombe-usgs 12 months ago

#140 - links to wiki pages

Issue - State: open - Opened by cresposito about 1 year ago - 2 comments
Labels: bug, documentation

#139 - Segformer prediction using `seg_images_in_folder`

Issue - State: open - Opened by ebgoldstein about 1 year ago - 4 comments
Labels: bug

#137 - Train_model script never finishes on wsl 2

Issue - State: closed - Opened by 2320sharon over 1 year ago - 15 comments
Labels: bug

#136 - TroubleShooting WSL GPU Installation Tips

Issue - State: closed - Opened by 2320sharon over 1 year ago - 31 comments
Labels: bug, documentation

#135 - INVALID_ARGUMENT: Cannot batch tensors with different shapes in component 0

Issue - State: closed - Opened by mvilar22 over 1 year ago - 5 comments

#134 - Fix for FILTER_VALUE and file unpacking after vstack error

Pull Request - State: closed - Opened by CameronBodine over 1 year ago

#133 - Unpack files from vstack if files not in subfolder

Pull Request - State: closed - Opened by CameronBodine over 1 year ago - 2 comments

#132 - FILTER_VALUE>1 produce issues in make_dataset.py

Issue - State: closed - Opened by CameronBodine over 1 year ago - 6 comments

#131 - Seg gym Module error

Issue - State: closed - Opened by sbosse12 over 1 year ago - 8 comments

#130 - npz format for gen_images_and_labels

Issue - State: closed - Opened by mvilar22 over 1 year ago - 18 comments

#129 - adaptations for "Keras v3" format (.keras)

Issue - State: closed - Opened by dbuscombe-usgs over 1 year ago - 8 comments
Labels: bug, enhancement, help wanted

#128 - Custom Loss and Metrics for SegFormer

Issue - State: open - Opened by ebgoldstein over 1 year ago - 4 comments
Labels: enhancement

#127 - How to use make_nd_dataset with images with more than 3 channels

Issue - State: closed - Opened by mvilar22 over 1 year ago - 4 comments

#126 - make_nd_datasets gives only 1 class

Issue - State: closed - Opened by mvilar22 over 1 year ago - 9 comments
Labels: documentation, question

#125 - Clear memory options

Pull Request - State: closed - Opened by dbuscombe-usgs over 1 year ago - 2 comments

#124 - reorganize config file inputs

Issue - State: open - Opened by dbuscombe-usgs over 1 year ago - 4 comments
Labels: enhancement

#122 - clear memory training

Pull Request - State: closed - Opened by dbuscombe-usgs over 1 year ago - 7 comments

#121 - update test data zenodo release with segformer example

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 1 comment

#120 - Troubleshooting tips?

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 2 comments

#119 - integrate transformers library in donda env for `segformer` model option

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 18 comments
Labels: help wanted

#118 - Set memory growth error in `seg_images_in_folder.py`

Issue - State: closed - Opened by CameronBodine almost 2 years ago - 5 comments

#117 - Memory issue / Segmentation fault for large datasets and long training times

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 6 comments
Labels: bug

#116 - Dev models

Pull Request - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 2 comments

#115 - Add 'transfer learning' Transformer-based model architecture

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 29 comments
Labels: documentation, enhancement

#114 - Ensure train / val metrics are not overwritten

Pull Request - State: closed - Opened by CameronBodine almost 2 years ago

#113 - Nan train loss with cat, hinge, and kld

Issue - State: closed - Opened by CameronBodine almost 2 years ago - 9 comments

#111 - Tensor shape error in train_model.py

Issue - State: closed - Opened by jmdelvecchio almost 2 years ago - 11 comments

#110 - Add config option `initial_epoch` to restore model checkpoint and position in the LR scheduler

Issue - State: closed - Opened by dbuscombe-usgs almost 2 years ago - 4 comments
Labels: enhancement

#109 - update `utils/gen_saved_model.py` for binary NCLASSES=2 model

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#105 - Fix Links in ReadMe

Pull Request - State: closed - Opened by 2320sharon about 2 years ago - 1 comment

#104 - Some ReadMe Links Do Not Work

Issue - State: closed - Opened by 2320sharon about 2 years ago

#103 - Tensor Shape error when mixing Greyscale + Color images

Issue - State: closed - Opened by sbosse12 about 2 years ago - 7 comments

#102 - Inconsistent dims of the one-hot encoded labels in the CoastTrain dataset

Issue - State: closed - Opened by FlorisCalkoen about 2 years ago - 9 comments
Labels: documentation, question

#101 - New release

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment

#99 - New makedatasets

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#98 - Remove the nested file structure in the test dataset and update docs if necessary

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 2 comments
Labels: bug

#97 - If resized folders exist (but are empty) there is no resizing (i.e., they are not populated)

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 4 comments
Labels: bug, documentation

#95 - explore loss weighting

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago
Labels: documentation, enhancement

#94 - Test, and add description of 'utilities' scripts to wiki

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 3 comments
Labels: documentation, question

#93 - Add 'jupyter' to Gym conda env

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago

#92 - Issue with make_nd_datasets

Issue - State: closed - Opened by sbosse12 about 2 years ago - 29 comments

#91 - bug fix makedatasets / remove batch_seg_folder

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago

#90 - New makedatasets

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#89 - provide documentation on these metrics - how they should be interpreted and used

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment
Labels: documentation

#88 - New makedatasets

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#87 - New makedatasets

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#86 - Remove padding

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment
Labels: enhancement

#85 - Update `train_model` to automatically compute NCLASSES from data

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 2 comments

#84 - Metrics at the end of Train.py

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment
Labels: documentation, enhancement

#83 - adjusted iou and dice

Pull Request - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment

#82 - Different Architectures?

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 3 comments
Labels: enhancement

#81 - Rewrite augmentation pipeline

Issue - State: open - Opened by ebgoldstein about 2 years ago - 14 comments
Labels: enhancement

#80 - Wiki revisions

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 1 comment
Labels: documentation

#79 - Restore model weights with missing/mystery config file

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 11 comments
Labels: question, wontfix

#78 - Installing Gym dependencies with conda recipe instead of yml

Issue - State: closed - Opened by venuswku about 2 years ago - 7 comments
Labels: enhancement

#77 - add CITATION.cff and add article details to README

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment

#76 - New metrics

Pull Request - State: closed - Opened by dbuscombe-usgs about 2 years ago

#75 - remove resize = false

Pull Request - State: closed - Opened by ebgoldstein about 2 years ago

#74 - Explore new loss functions

Issue - State: closed - Opened by ebgoldstein about 2 years ago - 7 comments
Labels: enhancement

#73 - more training / validation options

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 10 comments
Labels: enhancement

#72 - Explore class weighting

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 5 comments
Labels: documentation, enhancement

#71 - The test dataset has an updated zenodo release

Issue - State: closed - Opened by dbuscombe-usgs about 2 years ago - 1 comment
Labels: documentation

#70 - Wiki Improvement: A new page with a walkthrough of using the test dataset

Issue - State: closed - Opened by 2320sharon over 2 years ago - 2 comments
Labels: documentation, enhancement

#69 - Added Comments for Improved Readability

Pull Request - State: closed - Opened by 2320sharon over 2 years ago - 3 comments

#68 - create saved model

Pull Request - State: closed - Opened by ebgoldstein over 2 years ago - 1 comment
Labels: enhancement

#64 - new logo

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 4 comments

#63 - Error deleting something that doesn't exist

Pull Request - State: closed - Opened by CameronBodine almost 3 years ago - 1 comment

#58 - Package tests and testing

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago

#57 - enhance documentation (wiki)

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 12 comments
Labels: documentation

#56 - scrap `make_datasets`

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 2 comments
Labels: bug

#55 - scrap `ensemble_seg_images_in_folder`

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 5 comments
Labels: bug

#54 - Publish the test dataset (Hatteras) on Zenodo

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 1 comment
Labels: documentation, enhancement

#49 - Distributed training

Issue - State: closed - Opened by ebgoldstein almost 3 years ago - 1 comment
Labels: enhancement

#48 - TTA aug for 1 class and 3 class images

Pull Request - State: closed - Opened by ebgoldstein almost 3 years ago - 2 comments

#42 - Refactor README

Issue - State: closed - Opened by dbuscombe-usgs almost 3 years ago - 5 comments
Labels: documentation, good first issue

#41 - Model cards

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago

#40 - New metric generation and reporting

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 13 comments
Labels: documentation, enhancement

#39 - write text files for training and validation subsets

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 2 comments
Labels: documentation

#38 - zoo utility to report class-balanced subsets

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 1 comment

#37 - write out model training history to file

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 1 comment
Labels: enhancement

#36 - AUG_LOOPS must be >2

Issue - State: closed - Opened by ebgoldstein about 3 years ago - 2 comments

#35 - K-L metric or loss

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 4 comments
Labels: documentation, enhancement

#34 - store outputs of a deployed model used on sample imagery in npz format

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 3 comments
Labels: documentation, enhancement

#33 - model metadata

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 4 comments
Labels: documentation, enhancement

#32 - train / validation should report per-class IoU and dice

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 4 comments
Labels: enhancement

#31 - add filename to augmented npz (make_datasets.py outputs)

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 4 comments
Labels: documentation

#30 - no augmentation for validation set

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 7 comments
Labels: documentation, enhancement

#29 - Faeture map visualization / GradCAM

Issue - State: closed - Opened by dbuscombe-usgs about 3 years ago - 9 comments
Labels: enhancement, question

#28 - `train_model.py` plots fail with `RuntimeError: main thread is not in main loop`

Issue - State: closed - Opened by ebgoldstein about 3 years ago - 3 comments
Labels: bug

#24 - config for `unet`

Issue - State: closed - Opened by ebgoldstein about 3 years ago - 2 comments
Labels: documentation

#23 - Boilerplate

Issue - State: closed - Opened by ebgoldstein about 3 years ago
Labels: documentation

#21 - IoU testing

Issue - State: closed - Opened by ebgoldstein about 3 years ago - 2 comments
Labels: enhancement