Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Donders-Institute/bidscoin issues and pull requests

#235 - Quickly add common tags in BIDSMapper/editor

Issue - State: open - Opened by thomshaw92 2 months ago - 1 comment

#234 - [FIX] fix name undefinted variable in nibabel2bids.py

Pull Request - State: closed - Opened by Remi-Gau 3 months ago - 1 comment

#233 - typo in nibabel2bids.py

Issue - State: closed - Opened by Remi-Gau 3 months ago - 1 comment

#232 - Postfix error

Issue - State: closed - Opened by madeleinebarter 3 months ago - 9 comments
Labels: bug

#231 - New BIDS feature of dcm2niix

Issue - State: closed - Opened by mateuszpawlik 3 months ago - 2 comments

#230 - IndexError: string index out of range in dcm2niix2bids.py

Issue - State: closed - Opened by mateuszpawlik 3 months ago - 6 comments

#229 - Exclude sections behaves weirdly

Issue - State: closed - Opened by mateuszpawlik 4 months ago - 53 comments
Labels: wontfix

#228 - B0FieldSource as a list

Issue - State: closed - Opened by mateuszpawlik 4 months ago - 12 comments
Labels: bug

#227 - Update targets if run-1 added in increment_runindex within dcm2niixfiles loop

Pull Request - State: closed - Opened by DominikaZ 5 months ago - 8 comments

#226 - Can path to .bidscoin be configured?

Issue - State: closed - Opened by mateuszpawlik 5 months ago - 62 comments

#225 - Bidsmap schema doesn't require meta key in plugin

Issue - State: closed - Opened by mateuszpawlik 5 months ago - 17 comments

#223 - Make a bids2bids template bidsmap

Issue - State: closed - Opened by marcelzwiers 5 months ago
Labels: enhancement

#222 - Clicking on item in bidsmapper GUI crashes program

Issue - State: closed - Opened by DominikaZ 5 months ago - 1 comment

#221 - bidscoiner function leaves out every sequence

Issue - State: closed - Opened by rbonicel 5 months ago - 65 comments

#220 - Add CSA header support

Pull Request - State: closed - Opened by DominikaZ 5 months ago - 20 comments

#219 - Add CSA header support

Issue - State: closed - Opened by DominikaZ 5 months ago - 9 comments

#218 - Derivatives data

Issue - State: closed - Opened by DominikaZ 5 months ago - 4 comments

#217 - Add easy to check output with information on what source was converted to what BIDS files

Issue - State: closed - Opened by DominikaZ 5 months ago - 13 comments
Labels: enhancement

#216 - Add codespell: configuration, workflow + make it fix some typos

Pull Request - State: closed - Opened by yarikoptic 6 months ago - 2 comments

#215 - Add only existing jsonfiles to jsonfiles and make it set

Pull Request - State: closed - Opened by DominikaZ 6 months ago - 1 comment

#214 - Append dcm2niix postfix to acq only if acq is not defined

Pull Request - State: closed - Opened by DominikaZ 7 months ago - 10 comments

#213 - Fix dynamic <<>> runindex

Pull Request - State: closed - Opened by DominikaZ 7 months ago - 24 comments

#212 - Using `PhaseEncodingDirection` field to distinguish sequences

Issue - State: closed - Opened by djoerch 7 months ago - 6 comments
Labels: enhancement

#211 - ERROR | Could not parse required sub-<label> label

Issue - State: closed - Opened by rbonicel 7 months ago - 57 comments

#210 - cannot import name 'files' from 'importlib.resources'

Issue - State: closed - Opened by aribesik 7 months ago - 5 comments
Labels: bug

#209 - Failed to execute bidscoin with 4.2.1

Issue - State: closed - Opened by AzyshFotbnxe 7 months ago - 2 comments

#208 - Add citation information for plugin tools

Issue - State: closed - Opened by wtclarke 8 months ago - 6 comments

#207 - Update workflow.rst

Pull Request - State: closed - Opened by schoffelen 8 months ago

#206 - Update bidscoin on Neurodesk

Issue - State: closed - Opened by karl-koschutnig 9 months ago - 2 comments

#205 - spec2nii `anon` option does not create de-identified nii/json outputs

Issue - State: closed - Opened by schorschinho 9 months ago - 5 comments

#204 - bidscoiner with -session option

Issue - State: closed - Opened by karl-koschutnig 9 months ago - 18 comments

#203 - Qt GUI toolkit not working on WSL 2 (kali-linux)

Issue - State: closed - Opened by giurdeluca 9 months ago - 7 comments

#202 - dicomsort outputfolder

Issue - State: closed - Opened by FreyCap 10 months ago - 1 comment

#201 - Take the `dir` value from dcm2niix's sidecar file

Issue - State: closed - Opened by marcelzwiers 10 months ago - 1 comment
Labels: enhancement

#200 - Add the possibility to track bidscoin usage

Issue - State: closed - Opened by marcelzwiers 10 months ago - 6 comments
Labels: enhancement

#199 - Values in (0021,1106) vary per fmap acquisition

Issue - State: closed - Opened by marcelzwiers 10 months ago - 1 comment
Labels: bug

#198 - Update B0fieldIdentifier/Source when having multiple fieldmap runs

Issue - State: closed - Opened by marcelzwiers 10 months ago - 30 comments
Labels: enhancement

#197 - Store user settings in a personal config file

Issue - State: closed - Opened by marcelzwiers 10 months ago
Labels: enhancement

#195 - Add dynamic run index <<>> option

Pull Request - State: closed - Opened by DominikaZ 11 months ago - 12 comments

#193 - No module named 'pytest' while executing bidsmapper

Issue - State: closed - Opened by mateuszpawlik 11 months ago - 6 comments

#192 - First working version to implement argparse-manpage

Pull Request - State: closed - Opened by marcelzwiers 12 months ago - 8 comments

#191 - bidscoin automatically adds `*.nii*` to IntendedFor file name pattern

Issue - State: closed - Opened by mateuszpawlik about 1 year ago - 2 comments

#190 - Please clarify GPLv3 licensing

Issue - State: closed - Opened by musicinmybrain about 1 year ago - 3 comments

#189 - bidscoin pip install fails on apple silicon

Issue - State: closed - Opened by dkp about 1 year ago - 25 comments

#188 - Can I use dynamic value to fill in a suffix

Issue - State: closed - Opened by mateuszpawlik about 1 year ago - 14 comments

#187 - fix typo

Pull Request - State: closed - Opened by schoffelen about 1 year ago - 1 comment

#186 - Support for CT images or guideline for user to add additional modalities

Issue - State: closed - Opened by yehman about 1 year ago - 8 comments
Labels: enhancement

#183 - Relative paths in provenance attribute of runs in the bidsmap

Issue - State: closed - Opened by djoerch about 1 year ago - 3 comments

#182 - dashes in DICOM field causing error in pet2bids plugin

Issue - State: closed - Opened by yehman about 1 year ago - 3 comments

#181 - dicomsort could fail more gracefully when SeriesNumber is missing

Issue - State: closed - Opened by yehman about 1 year ago - 13 comments

#180 - ENH: skip files in hidden folders.

Pull Request - State: closed - Opened by djoerch about 1 year ago - 1 comment

#179 - documentation: program name

Issue - State: closed - Opened by michaelf500 about 1 year ago - 5 comments

#178 - Date shift(s) when dataset bidsification happens in multiple code calls.

Issue - State: closed - Opened by smoia over 1 year ago - 3 comments

#177 - Fail to run dcm2niix due to its version

Issue - State: closed - Opened by colIapse over 1 year ago - 4 comments

#176 - Pet spreadsheets

Pull Request - State: closed - Opened by marcelzwiers over 1 year ago

#175 - [ENH] PETXLSX Support

Pull Request - State: closed - Opened by bendhouseart over 1 year ago - 9 comments

#173 - PAR / REC to BIDS

Issue - State: closed - Opened by marcelzwiers over 1 year ago - 7 comments
Labels: bug

#172 - /raw is implicitly assumed despite specifying a different source folder

Issue - State: closed - Opened by themeo over 1 year ago - 3 comments

#171 - dicomsort session / bidsmap task-name

Issue - State: closed - Opened by karl-koschutnig over 1 year ago - 6 comments

#170 - Issue with bidsmapper, "is not the subpath"

Issue - State: closed - Opened by sanosenx86 over 1 year ago - 5 comments

#169 - FIX: add dcm2niix build options for jpeg2000 support in singularity definition.

Pull Request - State: closed - Opened by djoerch over 1 year ago - 1 comment

#166 - Unexpected `<<filepath:...>>` change within bidsmap.yaml

Issue - State: closed - Opened by mabiede over 1 year ago - 14 comments

#165 - fieldmap - EffectiveEchoTime

Issue - State: closed - Opened by karl-koschutnig over 1 year ago - 8 comments

#164 - Pet2bids (dicom only)

Pull Request - State: closed - Opened by bendhouseart over 1 year ago - 24 comments

#163 - DICOMDIR-data, missing temp folders / provenance store

Issue - State: closed - Opened by karl-koschutnig over 1 year ago - 40 comments
Labels: bug

#162 - dcm2niix failed to run error 3

Issue - State: closed - Opened by fooms2512 over 1 year ago - 27 comments
Labels: bug

#161 - Catch ValueError if run is not specified by user for new version of addmetadata

Pull Request - State: closed - Opened by smoia over 1 year ago - 5 comments

#160 - Declare minimum tqdm version required for compatibility

Pull Request - State: closed - Opened by smoia over 1 year ago

#159 - Catch possible ValueError if run is not specified by user

Pull Request - State: closed - Opened by smoia over 1 year ago

#158 - bidsmapper crashes when trying to test BIDScoin tools and settings (from GUI)

Issue - State: closed - Opened by smoia over 1 year ago - 1 comment

#157 - 'vox' field does not get parsed from bidsmap

Issue - State: closed - Opened by schorschinho over 1 year ago - 16 comments
Labels: enhancement

#156 - Pass different arguments to spec2nii plugin depending on run item

Issue - State: closed - Opened by schorschinho over 1 year ago - 13 comments
Labels: wontfix

#155 - Register a Research Resource Identifier (RRID) for BIDScoin

Issue - State: closed - Opened by robertoostenveld over 1 year ago - 1 comment

#153 - /bin/sh: 1: module: not found

Issue - State: closed - Opened by dmd almost 2 years ago - 2 comments

#152 - KeyError when run without making any changes

Issue - State: closed - Opened by dmd almost 2 years ago - 18 comments
Labels: bug

#151 - singularity version fails on ImportError

Issue - State: closed - Opened by dmd almost 2 years ago - 6 comments

#150 - Converting fmap from MPM-dataset

Issue - State: closed - Opened by karl-koschutnig almost 2 years ago - 4 comments

#149 - GE DICOM incorrectly detected as P-File

Issue - State: closed - Opened by ajschadler12 almost 2 years ago - 7 comments

#148 - Handling ABCD GE pepolar sequences and other split-files.

Issue - State: closed - Opened by ajschadler12 almost 2 years ago - 11 comments
Labels: bug

#147 - default readme in BIDS dataset after conversion

Issue - State: closed - Opened by Remi-Gau almost 2 years ago - 2 comments
Labels: enhancement

#146 - Dynamic values are evaluated although a sequence is not a match for run-item

Issue - State: closed - Opened by mateuszpawlik about 2 years ago - 11 comments
Labels: bug

#145 - Bideditor haves trouble opening, using a non fixed prefix

Issue - State: closed - Opened by ccomella about 2 years ago - 3 comments

#144 - Create bidsmap_sst.yaml

Pull Request - State: closed - Opened by renginys about 2 years ago

#143 - PyQt5 fails on RHEL 7.5

Issue - State: closed - Opened by caldodge about 2 years ago - 16 comments

#141 - Error when using rawmapper: "AttributeError: 'str' object has no attribute 'name'"

Issue - State: closed - Opened by Catyre about 2 years ago - 1 comment

#140 - dcm2niix setup issue.

Issue - State: closed - Opened by TamerGezici about 2 years ago - 6 comments

#139 - Getting 'TypeError: 'NoneType' object is not subscriptable' when testing BIDScoin

Issue - State: closed - Opened by Catyre about 2 years ago - 4 comments

#138 - No dicom mapping results

Issue - State: closed - Opened by landge about 2 years ago - 3 comments

#137 - module add dcm2niix fails (mac OS)

Issue - State: closed - Opened by amhaun01 about 2 years ago - 2 comments

#136 - bidseditor GUI missing "DICOM mappings" and "PAR mappings" tabs

Issue - State: closed - Opened by DanNBullock about 2 years ago - 5 comments

#134 - Having a filepath column in the BIDS editor GUI

Issue - State: closed - Opened by civier about 2 years ago - 7 comments

#133 - DICOM to BIDS (SIEMENS)

Issue - State: closed - Opened by lizannea over 2 years ago - 13 comments

#132 - Error running bidscoin -t

Issue - State: closed - Opened by andreifoldes over 2 years ago - 3 comments