DominikBuchner/BOLDigger issues and pull requests

#39 - Odd results now from BOLD but not earlier

Issue - State: closed - Opened by Anto007 3 months ago - 13 comments

#38 - Log in problem

Issue - State: closed - Opened by lukazuvic 4 months ago - 3 comments

#37 - Broken login

Issue - State: closed - Opened by voa257 6 months ago - 3 comments

#36 - Limit PySimpleGUI requirement to version 4

Issue - State: closed - Opened by hjarnek 8 months ago - 2 comments

#35 - Added code to return BIN for top hits

Pull Request - State: open - Opened by gjdury 10 months ago

#34 - Passing literal html to 'read_html' is deprecated and will be removed in a future version.

Issue - State: closed - Opened by gjeunen 11 months ago - 2 comments
Labels: bug, enhancement

#33 - Assigning BIN to top hits

Issue - State: closed - Opened by gjdury 12 months ago - 7 comments
Labels: enhancement

#32 - Filter possible NUMTS from BOLDigger assignments

Issue - State: closed - Opened by AlvaroFueyo 12 months ago - 2 comments
Labels: enhancement

#31 - windows: crash fixed by updating beautifulsoup4

Issue - State: closed - Opened by bwprice about 1 year ago - 2 comments
Labels: bug

#30 - BOLDigger hit type 2 overflagging

Issue - State: closed - Opened by AlvaroFueyo about 1 year ago - 1 comment
Labels: enhancement

#29 - Supspecies information dropped from best fitting hit

Issue - State: closed - Opened by naurasd about 1 year ago - 2 comments

#28 - Private entry as top hit despite 100% similarity published entry available

Issue - State: closed - Opened by naurasd about 1 year ago - 9 comments

#27 - Discrepancy between BOLDigger output and BOLD's identification engine

Issue - State: closed - Opened by naurasd over 1 year ago - 3 comments

#26 - error "Unable to complete operation on element with key out"

Issue - State: closed - Opened by Rishikeshklaxmi over 1 year ago - 2 comments

#25 - Is BOLD blocking BOLDigger

Issue - State: closed - Opened by MonicaRYoung over 1 year ago - 11 comments
Labels: bug

#24 - BOLD Not Responding: Attempting Retry

Issue - State: closed - Opened by anilorun over 1 year ago - 17 comments
Labels: bug

#23 - BOLD Not Responding: Attempting Retry

Issue - State: closed - Opened by onurdogan almost 2 years ago - 4 comments

#22 - Bold not responding

Issue - State: closed - Opened by frannasc almost 2 years ago - 2 comments

#21 - Include BOLD API extra data for corrected list of top hits?

Issue - State: closed - Opened by myoung02 about 2 years ago - 6 comments
Labels: enhancement

#20 - trouble running jamp_hit and digger_hit

Issue - State: closed - Opened by filipamsmartins about 2 years ago - 6 comments
Labels: bug

#19 - Hymenoptera issue

Issue - State: closed - Opened by pollingmarcel about 2 years ago - 7 comments
Labels: bug

#18 - API verificiation fails

Issue - State: closed - Opened by naurasd about 2 years ago - 4 comments

#17 - Finding best fitting hit fails for JAMP and BOLDigger method

Issue - State: closed - Opened by naurasd about 2 years ago - 4 comments

#16 - BOLD did not respond! several weeks?

Issue - State: closed - Opened by OndroV over 2 years ago - 7 comments
Labels: bug

#15 - Long fasta files (>50 seqs) stop the identification engine

Issue - State: closed - Opened by vanessamata over 2 years ago - 5 comments
Labels: bug

#14 - Damaged BOLD records stop the identification engine

Issue - State: closed - Opened by DominikBuchner over 2 years ago - 1 comment
Labels: bug

#13 - ID description

Issue - State: closed - Opened by SaschaKrenek over 2 years ago - 4 comments
Labels: bug

#12 - No Matches break the ITS and rbcl ID Engine atm

Issue - State: closed - Opened by DominikBuchner over 2 years ago - 1 comment
Labels: bug

#11 - Ubuntu: rbcl fasta file run error

Issue - State: closed - Opened by Canxis over 2 years ago - 5 comments
Labels: bug

#10 - Best fitting hit incorrect

Issue - State: closed - Opened by naurasd over 2 years ago - 4 comments
Labels: bug

#9 - Correction of top hits via BOLD API not initiated

Issue - State: closed - Opened by naurasd over 2 years ago - 9 comments

#8 - First hit on corrupt excel files

Issue - State: closed - Opened by DominikBuchner almost 4 years ago - 1 comment

#7 - xlsx output file error?

Issue - State: closed - Opened by naurasd almost 4 years ago - 3 comments

#6 - Upload fasta with more than 100 seqs?

Issue - State: closed - Opened by naurasd almost 4 years ago - 2 comments

#5 - Dataframe index issues in boldblast_coi.py, with workaround

Issue - State: closed - Opened by ingotron almost 4 years ago - 12 comments

#4 - Wrong file format while using "JAMP pipeline"

Issue - State: closed - Opened by lukylulu almost 4 years ago - 3 comments

#3 - Mac OSX tkinter.TclError - fix inside

Issue - State: closed - Opened by Tamtatatam over 4 years ago - 2 comments
Labels: enhancement, question

#2 - need to check end of fasta file

Issue - State: closed - Opened by OndroV over 4 years ago - 2 comments

#1 - boldsystems switched to https protocol, this broke the code

Issue - State: closed - Opened by DominikBuchner over 4 years ago

GitHub / DominikBuchner/BOLDigger issues and pull requests