Ecosyste.ms: Issues

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GitHub / DistanceDevelopment/mrds issues and pull requests

#102 - merging the optimist2 branch

Issue - State: open - Opened by fpetersma 3 months ago

#99 - Cran 2.3.0

Pull Request - State: closed - Opened by LHMarshall 11 months ago

#98 - Strange result from optimisation?

Issue - State: open - Opened by LHMarshall 12 months ago - 1 comment

#96 - Goodness of fit for complex MRDS model

Issue - State: open - Opened by erex 12 months ago

#95 - Allow users to be able to use the MCDS optimizer for double observer analyses

Issue - State: open - Opened by LHMarshall 12 months ago
Labels: enhancement, lowpriority

#94 - Remove vignette

Issue - State: closed - Opened by LHMarshall about 1 year ago
Labels: High priority

#93 - Dht var tables

Pull Request - State: closed - Opened by LHMarshall about 1 year ago

#92 - Updating the dht-var-tables from master

Pull Request - State: closed - Opened by LHMarshall about 1 year ago - 1 comment

#91 - format of book.tee.data confused

Issue - State: closed - Opened by erex about 1 year ago

#90 - ddf function constraints documentation needs clarifying

Issue - State: closed - Opened by lenthomas over 1 year ago - 5 comments
Labels: enhancement

#89 - MCDS.exe generating errors with io mrds models

Issue - State: closed - Opened by LHMarshall over 1 year ago - 2 comments
Labels: bug

#88 - mcds-dot-exe under Linux

Issue - State: open - Opened by erex over 1 year ago - 2 comments
Labels: enhancement

#87 - mrds needs extended checks

Issue - State: open - Opened by LHMarshall over 1 year ago
Labels: enhancement

#86 - CRAN performing additional S3 generics checks in rdevel

Issue - State: closed - Opened by LHMarshall over 1 year ago
Labels: bug, High priority

#85 - Characters need to be passed to MCDS as explicit factors

Issue - State: closed - Opened by LHMarshall over 1 year ago

#84 - Error from predict.ds when hr with covariates and se.fit = TRUE

Issue - State: closed - Opened by LHMarshall over 1 year ago - 8 comments
Labels: bug, High priority

#83 - Factor covariate ordering not checked when passed to MCDS

Issue - State: closed - Opened by LHMarshall over 1 year ago - 1 comment

#82 - Mcds update

Pull Request - State: closed - Opened by LHMarshall over 1 year ago

#81 - mcds-dot-exe branch code base should use modularized version of jonah417 code

Issue - State: closed - Opened by lenthomas over 1 year ago - 1 comment
Labels: enhancement

#80 - New mcds.exe analysis engine very slow with large datasets

Issue - State: closed - Opened by lenthomas over 1 year ago
Labels: enhancement, High priority

#79 - Uniform detection function without adjustments giving error

Issue - State: closed - Opened by LHMarshall over 1 year ago - 11 comments
Labels: bug

#78 - R can't find help for mcds-dot-exe

Issue - State: closed - Opened by lenthomas over 1 year ago
Labels: High priority

#77 - Readme.md file out of date

Issue - State: closed - Opened by erex over 1 year ago - 1 comment
Labels: bug

#76 - Variance components table branch

Issue - State: open - Opened by erex almost 2 years ago - 1 comment

#75 - Fix binned data using cutpoints

Pull Request - State: closed - Opened by LHMarshall over 1 year ago

#74 - Fix binned data using cutpoints

Pull Request - State: closed - Opened by LHMarshall over 1 year ago - 3 comments

#73 - Bug in create.bins

Issue - State: closed - Opened by lindesaysh over 1 year ago - 1 comment
Labels: bug

#72 - Hazard rate optimisation with bins

Issue - State: open - Opened by erex almost 2 years ago - 2 comments

#71 - dht variance contributions table

Pull Request - State: closed - Opened by dill almost 2 years ago - 5 comments

#70 - Variance components for `dht`

Issue - State: closed - Opened by dill about 2 years ago - 4 comments

#69 - Mcds dot exe

Pull Request - State: closed - Opened by dill about 2 years ago - 15 comments

#68 - add variance comparison vignette

Pull Request - State: closed - Opened by dill about 2 years ago - 3 comments

#67 - CRAN 2.2.8

Pull Request - State: closed - Opened by LHMarshall about 2 years ago - 1 comment

#66 - Linking in the mcds.exe optimization engine to fit dsmodels

Issue - State: closed - Opened by lenthomas about 2 years ago - 3 comments
Labels: enhancement, High priority

#65 - Switch to P2 default encounter rate variance for point transects

Issue - State: closed - Opened by dill about 2 years ago - 3 comments
Labels: enhancement

#64 - Differences from Distance for Windows vignette

Issue - State: open - Opened by dill about 2 years ago - 5 comments
Labels: enhancement

#63 - Variance components with mrds

Issue - State: open - Opened by erex about 2 years ago - 2 comments
Labels: question

#62 - Monotonicity constraint consistency between `mrds` and Distance for Windows

Issue - State: open - Opened by dill about 2 years ago - 2 comments
Labels: enhancement

#61 - NA's leading to incorrect 0 total values in abundance / density tables

Issue - State: closed - Opened by LHMarshall about 2 years ago - 5 comments
Labels: bug

#60 - Estimates by samples tables hard to interpret

Issue - State: open - Opened by erex about 2 years ago - 3 comments
Labels: enhancement

#59 - Plot for uniform with no adjustments is incorrect

Issue - State: closed - Opened by LHMarshall about 2 years ago - 2 comments

#58 - Plotting `rem.fi` models when there is truncation

Issue - State: closed - Opened by dill about 2 years ago - 3 comments
Labels: bug

#57 - Cran 2.2.7

Pull Request - State: closed - Opened by LHMarshall over 2 years ago - 1 comment

#56 - Suggest to remove Summary for individuals Summary statistics

Issue - State: closed - Opened by lenthomas over 2 years ago - 2 comments

#55 - Numerics improvements for variance calculations

Pull Request - State: closed - Opened by dill over 2 years ago

#54 - Expected cluster size displaying as a list

Issue - State: closed - Opened by LHMarshall over 2 years ago - 1 comment

#53 - Numerical problems without covariate scaling in Amakihi

Issue - State: closed - Opened by lenthomas over 2 years ago - 1 comment

#52 - Computation of CVs for individual and group density

Issue - State: open - Opened by erex over 2 years ago - 15 comments
Labels: question

#51 - Laura cran fixes

Pull Request - State: closed - Opened by dill over 2 years ago

#50 - PDF plot for point transect data not working

Issue - State: closed - Opened by erex almost 3 years ago - 3 comments
Labels: bug

#49 - Variable strip widths

Pull Request - State: closed - Opened by dill almost 3 years ago

#47 - Warning messages generated but hard to interpret

Issue - State: closed - Opened by lenthomas almost 3 years ago

#46 - 2-part normal work

Pull Request - State: closed - Opened by dill about 3 years ago

#45 - Stray error message when det func fitting fails

Issue - State: closed - Opened by lenthomas about 3 years ago - 2 comments

#44 - Possibly incorrect message in plotting detection function when 0 observations in a bin.

Issue - State: closed - Opened by lenthomas about 3 years ago - 2 comments
Labels: bug

#43 - Infrequent error in monotonicity check, diagnosed with bootstrap

Issue - State: closed - Opened by erex over 3 years ago - 4 comments
Labels: bug

#41 - k missing from individual summary table

Issue - State: closed - Opened by LHMarshall over 3 years ago
Labels: bug

#40 - Amakihi in Distance 1.0.3 vs DistWin 7.3

Issue - State: open - Opened by erex over 3 years ago - 29 comments
Labels: question

#39 - Issue 22 - left truncation cases biases in estimates seems to be back

Issue - State: closed - Opened by cschwarz-stat-sfu-ca over 3 years ago - 2 comments

#38 - Degrees of freedom calculation when animals in groups

Issue - State: closed - Opened by erex almost 4 years ago - 6 comments

#37 - Integration of gamma detection function

Issue - State: closed - Opened by erex over 3 years ago - 8 comments
Labels: bug

#36 - EDR with CI

Issue - State: closed - Opened by zielinskipp almost 4 years ago - 7 comments
Labels: enhancement

#35 - Speed-up `sample_ddf()` (for use in K-S test)

Issue - State: open - Opened by erex about 4 years ago - 1 comment
Labels: enhancement, lowpriority

#34 - "no truncation distance specified; using largest observed distance" when using binned distances

Issue - State: closed - Opened by dill about 4 years ago
Labels: enhancement

#33 - AIC function doesn't work on ddf MRDS object

Issue - State: closed - Opened by lenthomas about 4 years ago
Labels: enhancement

#32 - $data needs to be the data that fitted the model

Issue - State: closed - Opened by dill over 4 years ago - 1 comment
Labels: bug

#31 - Check object class in `ddf.gof`

Issue - State: closed - Opened by erex over 4 years ago

#30 - Extension to `add_df_covar_line` for PDF

Issue - State: closed - Opened by erex over 4 years ago - 1 comment
Labels: enhancement

#29 - Nifty new functions documentation invisible to `Distance` users

Issue - State: closed - Opened by erex over 4 years ago - 2 comments

#28 - Update plot colourschemes and simplify plotting arguments

Pull Request - State: closed - Opened by dill over 4 years ago - 2 comments

#27 - dht Dhat calculation

Issue - State: closed - Opened by dill over 4 years ago - 1 comment
Labels: bug

#26 - Chi squared test table digits

Issue - State: closed - Opened by dill over 4 years ago
Labels: lowpriority

#25 - Could not find function "integratepdf"

Issue - State: closed - Opened by pgiraudoux almost 5 years ago - 1 comment

#24 - NEWS and DESCRIPTION don't agree

Issue - State: closed - Opened by erex almost 5 years ago

#23 - `process.data` fails to trap data error

Issue - State: closed - Opened by erex about 5 years ago

#21 - mrds tests failing

Issue - State: closed - Opened by LHMarshall over 6 years ago - 2 comments

#20 - What does varn() return?

Issue - State: closed - Opened by erex about 7 years ago - 5 comments

#19 - Re-write plotting code

Issue - State: closed - Opened by dill over 7 years ago - 2 comments
Labels: enhancement, lowpriority

#16 - using int.range in ddf() generates an error

Issue - State: closed - Opened by megancatonferguson over 7 years ago - 15 comments

#14 - incorporating variable strip widths into dht

Issue - State: closed - Opened by megancatonferguson over 7 years ago
Labels: enhancement

#13 - install_github("DistanceDevelopment/mrds") fails due to missing dependencies

Issue - State: closed - Opened by jjrob over 7 years ago - 3 comments

#12 - Q-Q plot incorrect for left truncated data

Issue - State: closed - Opened by LHMarshall over 7 years ago - 2 comments

#11 - Recycling array of length 1 in vector array arithmetic is deprecated

Issue - State: closed - Opened by LHMarshall about 8 years ago - 7 comments

#10 - Binned data documentation - think it needs updating

Issue - State: closed - Opened by LHMarshall about 8 years ago - 1 comment

#9 - no date field in DESCRIPTION file of package ‘mrds’

Issue - State: closed - Opened by lenthomas over 8 years ago - 6 comments

#8 - Document how plotting detection functions works.

Issue - State: open - Opened by dill almost 9 years ago
Labels: lowpriority

#7 - AIC function

Issue - State: closed - Opened by dill almost 9 years ago

#6 - mrds point transect pdf plots

Issue - State: closed - Opened by erex almost 9 years ago - 1 comment

#5 - inconsistent dht return

Issue - State: closed - Opened by dill about 9 years ago
Labels: bug, enhancement

#4 - predict requires distance in newdata even if esw=T

Issue - State: closed - Opened by jlaake about 9 years ago - 1 comment

#3 - Computation time for mrds full independence fit of crabeater seals

Issue - State: open - Opened by erex over 9 years ago - 8 comments
Labels: enhancement, lowpriority

#2 - Lost between mrds versions?

Issue - State: closed - Opened by erex over 9 years ago - 1 comment