Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / DigitalSlideArchive/HistomicsTK issues and pull requests

#946 - compute_haralick_features works incorrectly when `im_intensity` is a float with [0, 1] values

Issue - State: closed - Opened by idc9 over 2 years ago - 3 comments
Labels: bug

#945 - Numerical issues in compute_haralick_features

Issue - State: closed - Opened by idc9 over 2 years ago

#944 - Adjust tests for scikit-image changes.

Pull Request - State: closed - Opened by manthey over 2 years ago

#943 - fix: Update matrix inversion to pseudo-inverse

Pull Request - State: closed - Opened by ngchanway over 2 years ago - 1 comment

#942 - add slider widget to positive pixel count

Pull Request - State: closed - Opened by marySalvi over 2 years ago - 3 comments

#941 - Use float in preference to np.float

Pull Request - State: closed - Opened by manthey over 2 years ago

#940 - Adjust packaging

Issue - State: closed - Opened by marySalvi over 2 years ago - 1 comment

#939 - Docs update

Pull Request - State: closed - Opened by marySalvi over 2 years ago

#938 - Adjustable Jupyter example

Issue - State: open - Opened by manthey over 2 years ago

#937 - Jupyter examples

Issue - State: open - Opened by manthey over 2 years ago

#936 - PPC: Don't output an alpha channel if it isn't needed

Pull Request - State: closed - Opened by manthey over 2 years ago

#935 - Update minor python versions used in testing.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#934 - Refactor the positive pixel count example.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#933 - Fix some CI issues.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#932 - Fix B008 linting error.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#931 - Fix linting of B020.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#930 - Installation issue on mac

Issue - State: closed - Opened by idc9 almost 3 years ago - 3 comments

#929 - Does HistomicsTK support slides in VSI format?

Issue - State: closed - Opened by InfinityBox almost 3 years ago - 8 comments

#928 - Fix an issue with the publish docker ci release step.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#927 - Adjust how the opencv dependency is requested.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#926 - Error while importing

Issue - State: closed - Opened by mahtabbigverdi almost 3 years ago - 4 comments

#925 - Add analysis to create superpixel pixelmaps and annotations

Pull Request - State: closed - Opened by naglepuff almost 3 years ago - 7 comments

#924 - Update circle-ci images.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#923 - Add Python 3.10 to the classifiers in setup.py.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#922 - Optionally emit image annotations for color deconvolution

Pull Request - State: closed - Opened by manthey almost 3 years ago

#921 - Speed up import

Pull Request - State: closed - Opened by manthey almost 3 years ago

#920 - Test on Python 3.10.

Pull Request - State: closed - Opened by manthey almost 3 years ago

#919 - Update tests for new scikit-image version.

Pull Request - State: closed - Opened by manthey about 3 years ago

#918 - Fix bug with accessing "weighted_centroid" attribute

Pull Request - State: open - Opened by AmarUCLA about 3 years ago - 1 comment

#917 - Edit bug in accessing attribute "weighted_centroid"

Pull Request - State: closed - Opened by AmarUCLA about 3 years ago

#916 - Installation of large_image on Linux

Issue - State: open - Opened by naveenagorre about 3 years ago - 4 comments

#915 - Shapely 1.8 causes some tests to fail.

Pull Request - State: closed - Opened by manthey about 3 years ago - 1 comment

#914 - TileSourceException: No available tilesource

Issue - State: closed - Opened by naveenagorre over 3 years ago - 2 comments

#913 - Update to newer circle-ci machine images.

Pull Request - State: closed - Opened by manthey over 3 years ago

#912 - Update cellularity_detection_superpixels.py

Pull Request - State: closed - Opened by abnsy over 3 years ago - 2 comments

#911 - Accommodate missing keys in annotations when parsing to table

Pull Request - State: closed - Opened by kheffah over 3 years ago

#910 - Update trace_object_boundaries.py

Pull Request - State: closed - Opened by abnsy over 3 years ago

#909 - Minor added flexibility to tiled array polygon merger

Pull Request - State: closed - Opened by kheffah over 3 years ago

#908 - Refactor and extend compute nuclear features

Pull Request - State: closed - Opened by kheffah over 3 years ago

#907 - Guarantee correspondence between nuclear and cytoplasmic features

Pull Request - State: closed - Opened by kheffah over 3 years ago

#906 - Publish docker image as part of CI.

Pull Request - State: closed - Opened by manthey over 3 years ago

#905 - Nuclei and cytoplasmic features not guaranteed to correspond to each other

Issue - State: closed - Opened by kheffah over 3 years ago - 1 comment
Labels: bug

#904 - Fix nuclear feature extraction by ensuring label and location is returned

Pull Request - State: closed - Opened by kheffah over 3 years ago - 2 comments

#903 - Don't build wheels for pypy or Python 3.10.

Pull Request - State: closed - Opened by manthey over 3 years ago

#902 - Is it possible to add annotation programmatically

Issue - State: closed - Opened by rogertrullo over 3 years ago - 4 comments

#901 - Fix building docs on CI.

Pull Request - State: closed - Opened by manthey over 3 years ago

#898 - Problems during installation on linux

Issue - State: closed - Opened by Naomi1009 almost 4 years ago - 6 comments

#893 - Run tests on macOS

Pull Request - State: closed - Opened by sumanthratna almost 4 years ago - 3 comments

#892 - Publish macOS wheels

Issue - State: closed - Opened by sumanthratna almost 4 years ago

#880 - numpy breaks import

Issue - State: closed - Opened by gregmbi over 4 years ago - 5 comments

#855 - Guide to Windows Installation

Issue - State: closed - Opened by sdasara95 almost 5 years ago - 2 comments

#837 - Document slicer_cli_web

Issue - State: closed - Opened by cooperlab almost 5 years ago - 2 comments

#640 - Superpixel Segmentation CLI

Pull Request - State: closed - Opened by slee172 over 5 years ago - 1 comment

#616 - ValueError: Does not understand character buffer dtype format string ('?')

Issue - State: closed - Opened by zzzghm almost 6 years ago - 15 comments

#607 - TileSourceException: No available tilesource

Issue - State: closed - Opened by obruck almost 6 years ago - 6 comments

#571 - build failure on Macos 10.14

Issue - State: closed - Opened by renexu about 6 years ago - 10 comments

#556 - Find the same stain vector for hematoxylin and eosin

Issue - State: open - Opened by joelive over 6 years ago - 4 comments

#554 - CMake-ify docs creation

Issue - State: closed - Opened by fbudin69500 over 6 years ago - 1 comment

#382 - A CLI implementation of autoencoder

Pull Request - State: closed - Opened by slee172 over 7 years ago - 3 comments

#306 - Use overlapping tiles while segmenting nuclei

Issue - State: closed - Opened by cdeepakroy almost 8 years ago - 1 comment

#297 - Use AppVeyor and CircleCI for CI testing on OSX and Windows

Issue - State: closed - Opened by cdeepakroy almost 8 years ago - 1 comment

#247 - Implementation of Membrane Detection CLI

Pull Request - State: closed - Opened by slee172 almost 8 years ago - 8 comments

#162 - Fix non-integer access in SimpleMask

Issue - State: closed - Opened by cooperlab over 8 years ago - 1 comment

#148 - TraceBounds infinite looping

Issue - State: closed - Opened by cooperlab over 8 years ago - 1 comment