Ecosyste.ms: Issues

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GitHub / DiamondLightSource/ispyb-api issues and pull requests

#229 - ISPyB ORM schema update v4.4.0

Pull Request - State: open - Opened by github-actions[bot] 1 day ago

#228 - ISPyB ORM schema update v4.4.0

Pull Request - State: closed - Opened by github-actions[bot] 10 days ago

#227 - Bump database schema version

Pull Request - State: open - Opened by gfrn 10 days ago - 1 comment

#226 - Drop Python < 3.10, add new versions

Pull Request - State: closed - Opened by gfrn 11 days ago - 1 comment

#225 - Bump database schema version

Pull Request - State: closed - Opened by gfrn 11 days ago - 1 comment

#224 - Bump database schema version

Pull Request - State: closed - Opened by gfrn 11 days ago

#222 - Migration to sqlalchemy version 2

Pull Request - State: closed - Opened by stephen-riggs 4 months ago - 1 comment

#221 - Is there an updated pipeline2ispyb.py script？

Issue - State: closed - Opened by Baokangwen 5 months ago - 2 comments

#220 - Modernize pre-commits and pyproject

Pull Request - State: closed - Opened by ndevenish 5 months ago - 2 comments

#219 - Download the ispyb-database package into a new folder

Pull Request - State: closed - Opened by stephen-riggs 6 months ago - 2 comments

#218 - Update and run pre-commit hooks

Pull Request - State: closed - Opened by ndevenish 6 months ago - 1 comment

#217 - ISPyB ORM schema update v4.2.1

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#216 - Fixes for the automatic ORM update workflow

Pull Request - State: closed - Opened by stephen-riggs 6 months ago

#215 - Change from using azure pipeline to GitHub workflows

Pull Request - State: closed - Opened by stephen-riggs 6 months ago

#214 - ISPyB ORM schema update v4.2.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server 6 months ago

#213 - Bump ispyb-database from v4.1.0 to v4.2.0

Pull Request - State: closed - Opened by KarlLevik 6 months ago

#212 - ISPyB ORM schema update v4.1.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server 10 months ago

#211 - Use DATABASE_SCHEMA version 4.10.0

Pull Request - State: closed - Opened by KarlLevik 10 months ago

#210 - Use context manager interface to open ispyb connection

Pull Request - State: closed - Opened by isikhar 12 months ago - 1 comment

#209 - Use stored procedure retrieve_grid_info_for_dc_v2

Pull Request - State: closed - Opened by KarlLevik about 1 year ago - 1 comment

#208 - Update DATABASE_SCHEMA to 4.0.1

Pull Request - State: closed - Opened by KarlLevik about 1 year ago - 1 comment

#207 - ISPyB ORM schema update v3.0.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server about 1 year ago

#205 - Rm method insert_motion_correction_drift in the EMAcquisition class

Pull Request - State: closed - Opened by KarlLevik over 1 year ago

#204 - Replace use of procrunner with subprocess

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#203 - Require mysql-connector-python>=8.0.32

Pull Request - State: closed - Opened by rjgildea over 1 year ago

#201 - Add catalog-info for dev portal

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 2 comments

#200 - ISPyB ORM schema update v2.0.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 1 year ago

#199 - Update to ispyb-database v2.0.0 in CI

Pull Request - State: closed - Opened by rjgildea over 1 year ago

#198 - Restrict Sphinx to be <7

Pull Request - State: closed - Opened by rjgildea over 1 year ago

#197 - Add suggestion to update database schema via PR

Pull Request - State: closed - Opened by rjgildea almost 2 years ago - 2 comments

#196 - ISPyB ORM schema update v1.36.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 2 years ago

#195 - ISPyB ORM schema update v1.35.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 2 years ago

#194 - ISPyB ORM schema update v1.35.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 2 years ago

#193 - ISPyB ORM schema update v1.34.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server about 2 years ago

#192 - ISPyB ORM schema update v1.34.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server about 2 years ago

#191 - Fix ispyb.job --new option broken by ispyb.model removal

Pull Request - State: closed - Opened by rjgildea about 2 years ago

#190 - New method update_dc_append_comments

Pull Request - State: closed - Opened by KarlLevik about 2 years ago

#189 - Update ISPyB ORM schema to database schema v1.34.0

Pull Request - State: closed - Opened by HorstmannA about 2 years ago

#188 - Remove deprecated ``ispyb.model``

Pull Request - State: closed - Opened by rjgildea about 2 years ago

#187 - ISPyB ORM schema update v1.33.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 2 years ago

#186 - Add support/CI for Python 3.11

Pull Request - State: closed - Opened by rjgildea over 2 years ago

#185 - ispyb.job bug fix: sweep may start counting at 0

Pull Request - State: closed - Opened by rjgildea over 2 years ago

#184 - 183: Pin mysql connector version

Pull Request - State: closed - Opened by DominicOram over 2 years ago

#183 - Latest mysql connector versions fail for utf8 chars

Issue - State: closed - Opened by DominicOram over 2 years ago - 5 comments

#182 - ISPyB ORM schema update v1.31.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 2 years ago

#180 - ISPyB ORM schema update v1.30.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 2 years ago

#179 - Using `ispyb.open` causes ispyb.model deprecation warning

Issue - State: open - Opened by ndevenish over 2 years ago

#178 - Support Python 3.10

Pull Request - State: closed - Opened by Anthchirp almost 3 years ago

#177 - ISPyB ORM schema update v1.29.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 3 years ago

#176 - Test against newer ISPyB database schema version (1.29)

Pull Request - State: closed - Opened by Anthchirp almost 3 years ago

#175 - Actually tag the ISPyB ORM schema

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 3 years ago

#174 - Tag generated ISPyB ORM schema with version number

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 3 years ago

#173 - ISPyB ORM schema update v1.28.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server almost 3 years ago - 2 comments

#172 - Add SQLAlchemy interface to documentation

Pull Request - State: closed - Opened by rjgildea almost 3 years ago - 1 comment

#171 - Add better enum support for "experimenttype"

Issue - State: open - Opened by DominicOram almost 3 years ago - 1 comment

#170 - Drop Python 3.6 support

Issue - State: closed - Opened by Anthchirp about 3 years ago

#169 - trouble with get_processing_program interface function

Issue - State: closed - Opened by dsclassen about 3 years ago - 5 comments

#168 - mx_data_reduction_to_ispyb does not upsert processingStatus from autoPROC.xml

Issue - State: closed - Opened by dsclassen about 3 years ago - 2 comments

#167 - ISPyB ORM schema update v1.28.0

Pull Request - State: closed - Opened by DiamondLightSource-build-server about 3 years ago

#166 - Run tests against ORM 1.28.0

Pull Request - State: closed - Opened by Anthchirp about 3 years ago

#165 - ispyb-database v1.28.0

Pull Request - State: closed - Opened by rjgildea about 3 years ago - 3 comments

#164 - Precommit updates

Pull Request - State: closed - Opened by Anthchirp over 3 years ago

#163 - a basic datacollection simulator

Pull Request - State: closed - Opened by stufisher over 3 years ago - 4 comments

#162 - de-dls ispyb.job

Pull Request - State: closed - Opened by stufisher over 3 years ago - 3 comments

#161 - Update ISPyB database version.

Pull Request - State: closed - Opened by HorstmannA over 3 years ago

#160 - Catch 'execute command denied to user' DB errors

Pull Request - State: closed - Opened by Anthchirp over 3 years ago

#159 - Update EM insert methods for new stored procedures

Pull Request - State: closed - Opened by d-j-hatton over 3 years ago - 1 comment

#158 - Update SQLAlchemy ORM models to ispyb-database v1.25.0

Pull Request - State: closed - Opened by rjgildea over 3 years ago - 1 comment

#156 - Update SQLAlchemy ORM models for ispyb-database v1.23.1

Pull Request - State: closed - Opened by Anthchirp over 3 years ago

#155 - Handle special autoPROC.xml files

Pull Request - State: closed - Opened by KarlLevik over 3 years ago - 1 comment

#154 - trouble parsing some autoPROC.xml files

Issue - State: closed - Opened by dsclassen over 3 years ago - 1 comment

#153 - Add a Zocalo (Workflows) ISPyB service

Pull Request - State: closed - Opened by Anthchirp over 3 years ago - 1 comment

#152 - Update sqlalchemy models to ispyb v1.21.1

Pull Request - State: closed - Opened by rjgildea over 3 years ago

#151 - Add tests for new EM particle picker calls

Issue - State: open - Opened by Anthchirp over 3 years ago - 1 comment

#150 - Add insert methods for new cryo EM tables.

Pull Request - State: closed - Opened by HorstmannA over 3 years ago - 1 comment

#149 - Optionally log SQLAlchemy query times

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#147 - Adapt insert_motion_correction() to take parameters like insert_ctf().

Pull Request - State: closed - Opened by HorstmannA almost 4 years ago - 2 comments

#146 - Ensure ispyb.job test uses correct credentials

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#145 - Update sqlalchemy models to ispyb v1.20.0

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#144 - last_data_collections_on: new session for each query

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#143 - Add back_populates to relationships

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#142 - Add pre-commit hook to sort imports with isort

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago

#141 - Add 'ispyb.job' to create/edit/view processing jobs

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago - 3 comments

#140 - Prepare deprecation of the sqlalchemy.session() function

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago - 1 comment

#139 - New ispyb.sqlalchemy.create_engine()

Pull Request - State: closed - Opened by rjgildea almost 4 years ago - 2 comments

#138 - ispyb.open(): support ISPYB_CREDENTIALS envvar

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#137 - Make sp params definitions consistent

Pull Request - State: closed - Opened by rjgildea almost 4 years ago - 1 comment

#136 - Add a debug facility to the sqlalchemy interface

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago

#135 - Backwards compatibility for ispyb-database < 1.19.0

Pull Request - State: closed - Opened by rjgildea almost 4 years ago - 2 comments

#134 - Update SQLAlchemy ORM models to ispyb-database v1.19.0

Pull Request - State: closed - Opened by rjgildea almost 4 years ago

#133 - Change package to /src layout

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago - 1 comment

#132 - Enable use_pure option of mysqlconnector

Pull Request - State: closed - Opened by rjgildea almost 4 years ago - 1 comment

#131 - Convert package to src/ layout

Issue - State: closed - Opened by Anthchirp almost 4 years ago

#130 - Remove deprecated features for 6.0 release

Pull Request - State: closed - Opened by Anthchirp almost 4 years ago - 1 comment