Ecosyste.ms: Issues

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GitHub / DevoLearn/devolearn issues and pull requests

#88 - Edit requirements.txt

Pull Request - State: closed - Opened by Pakhi07 8 months ago - 1 comment

#87 - adding different colour for centroids and added visualisation for devograph

Pull Request - State: closed - Opened by sushmanthreddy almost 2 years ago - 4 comments

#86 - added centroids of different colour

Pull Request - State: closed - Opened by sushmanthreddy almost 2 years ago - 1 comment

#85 - added different colour to centroids of cells

Pull Request - State: closed - Opened by sushmanthreddy almost 2 years ago - 4 comments

#84 - huggingface spaces

Pull Request - State: closed - Opened by sushumereddy almost 2 years ago

#83 - dependency management and changes for main.yml file... #issue 81 and #issue71

Pull Request - State: closed - Opened by sushmanthreddy almost 2 years ago - 2 comments

#82 - dependency management and changes for main.yml file... #issue 81 and #issue71

Pull Request - State: closed - Opened by sushumereddy almost 2 years ago - 2 comments

#81 - changes are needed in main.yml file about python versions

Issue - State: closed - Opened by sushmanthreddy about 2 years ago

#79 - Delete .gitignore

Pull Request - State: closed - Opened by sushmanthreddy about 2 years ago

#78 - The embryo_segmentor_model folder is missing from the devolearn directory

Issue - State: closed - Opened by Harikrishna-AL about 2 years ago - 4 comments

#77 - changing from "pip-compile setup.py" to "pip-compile requirements.in"

Pull Request - State: closed - Opened by sushmanthreddy about 2 years ago - 1 comment

#74 - add predict_from_video to cell_nucleus_segmentor

Pull Request - State: open - Opened by watarungurunnn over 2 years ago - 1 comment

#73 - Add instruction to install from the source

Pull Request - State: open - Opened by watarungurunnn over 2 years ago - 1 comment

#72 - Colab upgrade

Pull Request - State: closed - Opened by alon1samuel over 2 years ago - 1 comment

#71 - use pip-compile + requirements.in for better dependency management

Issue - State: open - Opened by Mayukhdeb over 2 years ago - 2 comments
Labels: enhancement

#70 - Changing instructions to install newest version of devolearn

Pull Request - State: closed - Opened by watarungurunnn over 2 years ago

#69 - Colab demo requires multiple upgrades

Issue - State: open - Opened by Mayukhdeb over 2 years ago - 18 comments
Labels: bug

#68 - Fix test fail: Due to recompute_scale_factor missing in UpsamplingBilinear2d

Pull Request - State: closed - Opened by kingjuno over 2 years ago - 3 comments

#67 - Hotfix wrong url of the provided model.

Pull Request - State: closed - Opened by watarungurunnn over 2 years ago

#66 - hotfix cell_nucleus_segmentor model_url

Pull Request - State: closed - Opened by watarungurunnn over 2 years ago

#65 - Set up Codecov (#56)

Pull Request - State: closed - Opened by s0mnaths over 3 years ago - 2 comments

#64 - Migrate from Travis CI to Github actions

Pull Request - State: closed - Opened by kingjuno over 3 years ago - 1 comment

#63 - Minor: Fix the broken links

Pull Request - State: closed - Opened by iammarco11 over 3 years ago

#62 - devolearn: add nucleus segmentation model

Pull Request - State: closed - Opened by Mainakdeb over 3 years ago

#61 - Migrate from Travis CI to Github Actions

Issue - State: closed - Opened by Mainakdeb over 3 years ago - 1 comment

#60 - devolearn: rename embryo_segmentor -> cell_membrane_segmentor

Pull Request - State: closed - Opened by Mainakdeb over 3 years ago

#59 - devolearn: upgrade cell membrane segmentation model

Pull Request - State: closed - Opened by Mainakdeb over 3 years ago - 1 comment

#58 - Try to integrate streamlit

Issue - State: closed - Opened by Mayukhdeb over 3 years ago - 2 comments
Labels: help wanted

#57 - CI: use pytest (#56)

Pull Request - State: closed - Opened by Mainakdeb almost 4 years ago

#56 - CI: move to pytest+codecov

Issue - State: open - Opened by Mayukhdeb almost 4 years ago - 2 comments

#55 - devolearn: long term vision

Issue - State: open - Opened by Mayukhdeb almost 4 years ago - 2 comments
Labels: enhancement

#54 - devolearn/lineage_population_model: add postprocessing algorithm

Pull Request - State: closed - Opened by Mainakdeb almost 4 years ago - 3 comments

#53 - tests: unit tests do not check the outputs of models

Issue - State: open - Opened by Mayukhdeb almost 4 years ago - 2 comments

#52 - Migration of cv2 read and write operations (videos and images) to decord and imageio

Pull Request - State: closed - Opened by aswarth123 almost 4 years ago - 6 comments

#51 - Makes all models subclass of InferenceEngine class

Pull Request - State: closed - Opened by vrutikrabadia almost 4 years ago

#50 - Update README.md

Pull Request - State: closed - Opened by vrutikrabadia almost 4 years ago

#49 - devolearn: make all models a subclass of InferenceEngine

Issue - State: closed - Opened by Mayukhdeb almost 4 years ago - 1 comment

#48 - Update: readme.md

Pull Request - State: closed - Opened by vrutikrabadia almost 4 years ago

#47 - Enhancement: Allow prediction on numpy arrays present as local variable

Issue - State: open - Opened by vrutikrabadia almost 4 years ago - 4 comments
Labels: enhancement

#46 - documentation: error in documentation of function lineage population model

Issue - State: closed - Opened by vrutikrabadia almost 4 years ago - 2 comments
Labels: documentation

#45 - Partial conversion of cv2 IO operations to imageio

Pull Request - State: closed - Opened by aswarth123 almost 4 years ago - 3 comments

#44 - update file: requirment.txt

Pull Request - State: closed - Opened by vrutikrabadia almost 4 years ago - 3 comments

#43 - move to decord/imageio for reading videos/images

Issue - State: open - Opened by Mayukhdeb almost 4 years ago - 5 comments
Labels: enhancement

#42 - setup: installation on colab initiates reinstallation of PyTorch

Issue - State: closed - Opened by Mayukhdeb almost 4 years ago - 5 comments

#41 - (Fix #40) devolearn: define base InferenceEngine class

Pull Request - State: closed - Opened by Mainakdeb almost 4 years ago

#40 - build a base InferenceEngine class

Issue - State: closed - Opened by Mayukhdeb almost 4 years ago - 1 comment

#39 - Correction and alignment of text

Pull Request - State: closed - Opened by Shruti-Raj-Vansh-Singh almost 4 years ago

#38 - devolearn: upgrade lineage population model

Pull Request - State: closed - Opened by Mainakdeb almost 4 years ago

#37 - readme : add links to datasets.

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago - 1 comment

#36 - fix #31 : generate docstrings

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago

#35 - models : reduce tqdm import statements

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago

#34 - fix #4 : add gpu support

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago - 3 comments

#33 - requirements: downgraded packages imgaug, pandas, pytz and scipy

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago

#32 - fix #3 : add tqdm.notebook for notebook

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago

#31 - generate docstrings

Issue - State: closed - Opened by Mayukhdeb almost 4 years ago

#30 - refactor : image size and alignment in readme

Pull Request - State: closed - Opened by rtharungowda almost 4 years ago - 1 comment

#29 - devolearn: embryo_generator_model: fix model_url

Pull Request - State: closed - Opened by Mainakdeb about 4 years ago

#28 - devolearn: upgrade generative model

Pull Request - State: closed - Opened by Mainakdeb about 4 years ago

#27 - paper: add data sources

Issue - State: closed - Opened by Mayukhdeb about 4 years ago - 2 comments

#26 - Figure 2

Issue - State: closed - Opened by devoworm about 4 years ago

#25 - Figure 1

Issue - State: closed - Opened by devoworm about 4 years ago

#24 - Add Hacktoberfest Topic

Issue - State: closed - Opened by rudrajit1729 over 4 years ago - 2 comments

#23 - fix #14: reformat __all__

Pull Request - State: closed - Opened by Mayukhdeb over 4 years ago

#22 - changed description in setup.py

Pull Request - State: closed - Opened by Abtaha over 4 years ago - 1 comment

#21 - formatted __all__ as mentioned in the issue

Pull Request - State: closed - Opened by jainal09 over 4 years ago - 1 comment

#20 - Change Description

Pull Request - State: closed - Opened by RaviKarrii over 4 years ago

#19 - Add links #17

Pull Request - State: closed - Opened by rudrajit1729 over 4 years ago - 4 comments

#18 - setup.py: change description

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 4 comments
Labels: good first issue, Hacktoberfest

#17 - devolearn: add links to documentation in comments

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 7 comments
Labels: good first issue, Hacktoberfest

#16 - Remove extra lines from test.py and add newline at the end of the file

Pull Request - State: closed - Opened by Joel-hanson over 4 years ago - 3 comments

#15 - Remove White Spaces and added lines at the end in test.py

Pull Request - State: closed - Opened by shreyraj2002 over 4 years ago - 1 comment

#14 - __init__.py: reformat __all__

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 2 comments
Labels: good first issue, Hacktoberfest

#13 - test.py: remove unnecessary whitespaces

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 2 comments
Labels: good first issue, Hacktoberfest

#12 - README.md: Fix inconsistent image widths

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 2 comments
Labels: good first issue

#11 - embryo_generator_model: update generator model architecture

Issue - State: closed - Opened by Mayukhdeb over 4 years ago
Labels: enhancement, help wanted

#10 - tests: deprecation warning when importing collections

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 4 comments
Labels: good first issue

#9 - readme: minor formatting/copy edits

Pull Request - State: closed - Opened by jesparent over 4 years ago

#8 - contributing: formating & copy edits

Pull Request - State: closed - Opened by jesparent over 4 years ago

#7 - Broken paths in torch.load() after downloading

Issue - State: closed - Opened by Mayukhdeb over 4 years ago

#6 - Added Setup.py

Pull Request - State: closed - Opened by ujjwalll over 4 years ago

#5 - Fixed segmentation_models_pytorch

Pull Request - State: closed - Opened by ujjwalll over 4 years ago

#4 - Partial GPU support

Issue - State: closed - Opened by Mayukhdeb over 4 years ago - 1 comment

#3 - Missing tqdm.notebook mode

Issue - State: closed - Opened by Mayukhdeb over 4 years ago

#1 - Update README.md

Pull Request - State: closed - Opened by ujjwalll over 4 years ago