Ecosyste.ms: Issues

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GitHub / DessimozLab/OMArk issues and pull requests

#35 - question about OMArk rules and omamer result

Issue - State: open - Opened by CAShuangchao about 1 month ago - 2 comments

#34 - Problems running omark - list index out of range

Issue - State: open - Opened by claraptzsl 3 months ago - 2 comments

#33 - Problem during writing step of OMArK

Issue - State: open - Opened by Enorya 4 months ago - 2 comments

#32 - genus not available for taxonomic ranking

Issue - State: open - Opened by SAMtoBAM 7 months ago

#31 - Update plot_all_results.py

Pull Request - State: closed - Opened by KPapac 7 months ago

#30 - Homininae prebuilt database - Problem

Issue - State: open - Opened by rlibouba 12 months ago - 4 comments

#28 - HOG taxonomy seems buggy

Issue - State: open - Opened by MmasterT 10 months ago - 1 comment

#27 - run standalone omark

Issue - State: closed - Opened by bitezhu 10 months ago - 2 comments

#26 - Granulosicoccus genera not being classified in a good way by omark

Issue - State: open - Opened by Bio-finder 10 months ago - 4 comments

#25 - omark_contextualize.py ERRORS: Max retries exceeded / Too many open files

Issue - State: open - Opened by nam-hoang 11 months ago - 4 comments

#24 - Update plot_all_results.py

Pull Request - State: closed - Opened by SamCT 12 months ago - 1 comment

#23 - Question about Inconsistent HOG

Issue - State: closed - Opened by xiaoyezao about 1 year ago - 3 comments

#22 - Fragmented proteins

Issue - State: closed - Opened by DiegoSafian about 1 year ago - 3 comments

#21 - KeyError: 'Filename' in plot_all_results.py

Issue - State: closed - Opened by StepanSaenko over 1 year ago - 3 comments

#20 - IndexError: list index out of range

Issue - State: closed - Opened by StepanSaenko over 1 year ago - 2 comments

#19 - remove contaminants

Issue - State: closed - Opened by xiaoyezao over 1 year ago - 4 comments

#18 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.6

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#17 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#16 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#15 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#14 - Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#13 - OMArk error

Issue - State: closed - Opened by vkkodali over 1 year ago - 5 comments

#12 - Support python >3.11

Issue - State: open - Opened by vkkodali almost 2 years ago - 3 comments

#11 - DB file is not well formated

Issue - State: closed - Opened by NukesRadars almost 2 years ago - 1 comment

#10 - Some small updates to plot script

Pull Request - State: closed - Opened by dirkjanvw almost 2 years ago

#9 - Companion script for combined plot?

Issue - State: closed - Opened by dirkjanvw almost 2 years ago - 4 comments

#8 - Webserver job throws an error after 10 minutes

Issue - State: closed - Opened by kkowalden almost 2 years ago - 3 comments

#7 - Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.6.4

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#6 - Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.6.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#5 - Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.2

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#4 - Bump actions/setup-python from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#3 - Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#2 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#1 - create png and pdf figures

Pull Request - State: closed - Opened by alpae over 2 years ago