Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / DeepRank/Deeprank-GNN issues and pull requests

#79 - Update README.md for archiving the repository

Pull Request - State: closed - Opened by gcroci2 about 1 year ago - 4 comments

#78 - change 'LYS' from 'neg_charged' to 'pos_charged'

Issue - State: closed - Opened by ntxxt almost 2 years ago

#75 - Support custom regression targets

Issue - State: open - Opened by erikedlund over 2 years ago

#74 - Can't read output from example 1ATN

Issue - State: closed - Opened by erikedlund almost 3 years ago - 9 comments

#73 - antibodies and antigens

Issue - State: closed - Opened by sunchuance almost 3 years ago - 1 comment

#72 - add BM5 and CAPRI dataset details and predictions

Pull Request - State: closed - Opened by manonreau about 3 years ago

#71 - add biological vs crystal interfaces application

Pull Request - State: closed - Opened by manonreau about 3 years ago

#70 - cuda compatibility

Pull Request - State: closed - Opened by manonreau about 3 years ago

#69 - update README file

Pull Request - State: closed - Opened by DTRademaker about 3 years ago

#68 - Correction to README file

Pull Request - State: closed - Opened by DTRademaker about 3 years ago - 3 comments

#67 - update model extension

Pull Request - State: closed - Opened by manonreau about 3 years ago

#66 - Paper data

Pull Request - State: closed - Opened by manonreau about 3 years ago

#65 - add pretrained model from the paper

Pull Request - State: closed - Opened by manonreau about 3 years ago

#64 - Cff

Pull Request - State: closed - Opened by manonreau over 3 years ago

#63 - Packaging 1.3

Pull Request - State: closed - Opened by NicoRenaud over 3 years ago

#62 - Improve coverage

Pull Request - State: closed - Opened by NicoRenaud over 3 years ago

#61 - fix small typo

Pull Request - State: closed - Opened by NicoRenaud over 3 years ago

#60 - update classification output format

Pull Request - State: closed - Opened by manonreau over 3 years ago

#59 - correct clustering bug

Pull Request - State: closed - Opened by manonreau over 3 years ago

#58 - louvain clustering is not available to network model

Issue - State: closed - Opened by cbaakman over 3 years ago - 1 comment

#57 - Update hdf5 opening

Pull Request - State: closed - Opened by manonreau over 3 years ago

#55 - Difference between WGAT and GraphAttention

Issue - State: closed - Opened by yanistazi over 3 years ago - 1 comment

#54 - Update GraphGenMP.py

Pull Request - State: closed - Opened by manonreau over 3 years ago

#53 - set biopython features as optional

Pull Request - State: closed - Opened by manonreau over 3 years ago

#52 - update NeuralNet for gpu use

Pull Request - State: closed - Opened by manonreau over 3 years ago

#51 - Fix install

Pull Request - State: closed - Opened by NicoRenaud over 3 years ago

#50 - reverted to h5py 3.1.0

Pull Request - State: closed - Opened by NicoRenaud over 3 years ago

#49 - update for gpu usage

Pull Request - State: closed - Opened by manonreau over 3 years ago

#48 - Update tutorial.generate_graph.rst

Pull Request - State: closed - Opened by amjjbonvin over 3 years ago

#47 - Update overview.rst

Pull Request - State: closed - Opened by amjjbonvin over 3 years ago

#46 - Correct bugs

Pull Request - State: closed - Opened by manonreau over 3 years ago

#45 - corrected bugs

Pull Request - State: closed - Opened by manonreau over 3 years ago

#44 - update zone requirement

Pull Request - State: closed - Opened by manonreau over 3 years ago

#43 - automate_task

Pull Request - State: closed - Opened by manonreau over 3 years ago

#42 - Neuralnet update

Pull Request - State: closed - Opened by manonreau over 3 years ago

#41 - update pssm requirements + add_target function

Pull Request - State: closed - Opened by manonreau over 3 years ago

#40 - update documentation

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#39 - Setup doc

Pull Request - State: closed - Opened by NicoRenaud almost 4 years ago

#38 - Update neuralnet indent

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#37 - update NeuralNet to make testing more user friendly

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#36 - update NeuralNet to make testing more user friendly

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#35 - add doc

Pull Request - State: closed - Opened by manonreau almost 4 years ago - 2 comments

#34 - Fix install

Pull Request - State: closed - Opened by NicoRenaud almost 4 years ago

#33 - adapt the code to multi-class classification mode

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#32 - Update DataSet.py

Pull Request - State: closed - Opened by manonreau almost 4 years ago

#31 - Update Graph.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#30 - Update DataSet.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#29 - add docstrings to metrics.py and NeuralNet.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#28 - add docstrings to Metrics.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#27 - add regression metrics

Pull Request - State: closed - Opened by manonreau about 4 years ago

#26 - Coveralls coverage badge fails

Issue - State: closed - Opened by CunliangGeng about 4 years ago - 1 comment

#25 - fix classification tasks

Pull Request - State: closed - Opened by manonreau about 4 years ago

#24 - Egat

Pull Request - State: closed - Opened by manonreau about 4 years ago

#23 - fix test and pretrained model loading

Pull Request - State: closed - Opened by manonreau about 4 years ago

#22 - Update GraphGen.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#21 - onehot encoding for residue type and polarity

Pull Request - State: closed - Opened by manonreau about 4 years ago

#20 - wrap fname update in a function

Pull Request - State: closed - Opened by manonreau about 4 years ago

#19 - Update NeuralNet.py

Pull Request - State: closed - Opened by manonreau about 4 years ago

#18 - add export options

Pull Request - State: closed - Opened by manonreau about 4 years ago

#17 - Test loading

Pull Request - State: closed - Opened by NicoRenaud about 4 years ago

#16 - fix memory leaks

Pull Request - State: closed - Opened by manonreau over 4 years ago - 1 comment

#15 - Add a Codacy badge to README.md

Pull Request - State: closed - Opened by codacy-badger over 4 years ago

#14 - Setup ci

Pull Request - State: closed - Opened by NicoRenaud over 4 years ago

#13 - Plot and metrics

Pull Request - State: closed - Opened by manonreau over 4 years ago

#12 - metrics and test

Pull Request - State: closed - Opened by manonreau over 4 years ago

#11 - add metrics.py

Pull Request - State: closed - Opened by manonreau over 4 years ago

#10 - Fix example

Pull Request - State: closed - Opened by NicoRenaud over 4 years ago

#9 - Hit rate

Pull Request - State: closed - Opened by manonreau over 4 years ago

#8 - debug NeuralNet.py and DataSet.py

Pull Request - State: closed - Opened by manonreau over 4 years ago

#7 - add loss/epoch and acc/epoch plots

Pull Request - State: closed - Opened by manonreau over 4 years ago

#6 - Manon

Pull Request - State: closed - Opened by manonreau over 4 years ago - 1 comment

#5 - add conditions to cluster section of load_one_graph

Pull Request - State: closed - Opened by manonreau over 4 years ago

#4 - Update NeuralNet.py

Pull Request - State: closed - Opened by manonreau over 4 years ago - 1 comment

#3 - Update foutnet.py

Pull Request - State: closed - Opened by manonreau over 4 years ago

#2 - Update ResidueGraph.py

Pull Request - State: closed - Opened by manonreau over 4 years ago

#1 - Cleanup

Pull Request - State: closed - Opened by NicoRenaud over 4 years ago