DataBiosphere/newt-transformer issues and pull requests

#41 - Generate schema and add it to user_metadata under describedBy

Issue - State: open - Opened by cricketsloan almost 6 years ago

#40 - Update sanitized fields

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago - 1 comment

#39 - Assign a default value when no demographics are available

Pull Request - State: closed - Opened by david4096 almost 6 years ago

#38 - Sanitize values to null

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago - 1 comment

#37 - Other file types

Issue - State: open - Opened by david4096 almost 6 years ago

#36 - Reset empty string values to None (null) (resolves #35)

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago

#35 - Gen3 export/transform produces inconsistent JSON value types

Issue - State: closed - Opened by jessebrennan almost 6 years ago

#34 - Update list of public fields

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago

#33 - Test data bleach

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago

#32 - Sanitize metadata using values of the same type

Pull Request - State: closed - Opened by mikebaumann almost 6 years ago - 1 comment

#31 - Sanitize data using values of the same type

Issue - State: closed - Opened by mikebaumann almost 6 years ago

#30 - Remove old transforming format

Issue - State: open - Opened by jessebrennan almost 6 years ago - 2 comments

#29 - Problems with other datasets

Issue - State: open - Opened by david4096 almost 6 years ago

#28 - Add program data close #25

Pull Request - State: closed - Opened by david4096 almost 6 years ago - 3 comments

#27 - Remove hard-coding of `program` and `project` from sanitizer (resolves #26)

Pull Request - State: closed - Opened by mikebaumann almost 6 years ago

#26 - Remove hard-coding of `program` and `project` name from sanitizer

Issue - State: closed - Opened by mikebaumann almost 6 years ago - 1 comment

#25 - Add `program` metadata

Issue - State: closed - Opened by mikebaumann almost 6 years ago

#24 - Changed `data_bleach.py` to retain `sample.submitter_id` (resolves #23)

Pull Request - State: closed - Opened by mikebaumann almost 6 years ago

#23 - Change data_bleach.py to retain sample.submitter_id

Issue - State: open - Opened by mikebaumann almost 6 years ago

#22 - Add study and project metadata

Pull Request - State: closed - Opened by david4096 almost 6 years ago - 1 comment

#21 - Add demographic and sample metadata

Pull Request - State: closed - Opened by david4096 almost 6 years ago

#20 - Add script for sanitizing data

Pull Request - State: closed - Opened by jessebrennan almost 6 years ago

#19 - Make project pip installable

Pull Request - State: closed - Opened by jessebrennan over 6 years ago

#18 - first release

Issue - State: closed - Opened by cricketsloan over 6 years ago

#17 - Another input format

Issue - State: open - Opened by cricketsloan over 6 years ago - 1 comment

#16 - Improve unit tests and test data

Issue - State: open - Opened by david4096 over 6 years ago

#15 - Fix Travis link in README (resolves NEWT-18)

Pull Request - State: closed - Opened by jessebrennan over 6 years ago

#14 - Travis link in readme is broken

Issue - State: closed - Opened by jessebrennan over 6 years ago - 1 comment