Data-Science-Brigade/modelo-epidemiologico-sc issues and pull requests

#65 - :tada: script to prepare raw data directly downloaded from boavista site

Pull Request - State: closed - Opened by NataliaDelCoco about 3 years ago - 2 comments
Labels: feature ✨

#64 - Create script to prepare raw data from BoaVista

Issue - State: closed - Opened by NataliaDelCoco about 3 years ago
Labels: feature request 📢

#63 - 🤖 Revisit the generative model for multiwave dynamics: add cases first then deaths

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: modelling 🖥️

#62 - Revise cases likelihood

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago - 5 comments
Labels: modelling 🖥️

#61 - [BUG] Fixed epidemic start date lead to unrealistic data fitting

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞

#60 - ⚙️ Organize scripts in a more modular and reusable way

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: refactoring ♻️

#59 - 🤡 add script to create mock multiwave dataset

Pull Request - State: closed - Opened by NataliaDelCoco over 3 years ago

#58 - Add multiple variants to the inferential model

Issue - State: open - Opened by jonjoncardoso over 3 years ago - 4 comments
Labels: modelling 🖥️

#57 - How to adequate our equations to include multiple waves?

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: modelling 🖥️

#56 - 🐞 C Stack Usage bug

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞

#55 - 🔨 Consider using posterior library to replace model_output$out

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: refactoring ♻️, feature request 📢

#54 - Feature/natalia update start date and reparametrize si

Pull Request - State: closed - Opened by NataliaDelCoco over 3 years ago - 2 comments
Labels: modelling 🖥️

#53 - ⚙️ Allow run_health_regions_A and run_health_regions_B scripts to use init values from previous weeks

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 1 comment

#52 - Merge branch 'develop' into feature/natalia-independent-inference

Pull Request - State: closed - Opened by NataliaDelCoco over 3 years ago

#51 - 🤖 Create a synthetic dataset that emulates multiwave dynamics

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: modelling 🖥️

#50 - 🤔 Find sources on how to model multiwave dynamics

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 5 comments
Labels: open question 💭, exploratory analysis 🔬, modelling 🖥️

#49 - 📇 Add hospitalization data

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: exploratory analysis 🔬, modelling 🖥️

#48 - 🤔 If Google Mobility data had a smaller impact on Rt, would that lead to a better fit of the data?

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: open question 💭, exploratory analysis 🔬, modelling 🖥️

#47 - 📈 Rethink the `cases` likelihood equation

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 2 comments
Labels: modelling 🖥️

#46 - ⚙️ Split microregions in two scripts so they can be run in parallel

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: feature ✨

#45 - 📝 Add name of locality to save_path

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 1 comment
Labels: documentation 📖, feature ✨

#44 - 💡 Allow multiple distinct localities to be run in parallel

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: good first issue 🤝

#43 - 📈 Reparametrize fixed and fitted distributions

Issue - State: closed - Opened by NataliaDelCoco over 3 years ago
Labels: exploratory analysis 🔬, modelling 🖥️

#42 - 📅 Set start date to 8/mach/2020 to all health and macro regions

Issue - State: closed - Opened by NataliaDelCoco over 3 years ago
Labels: feature ✨

#41 - Consider previously trained model for each region

Pull Request - State: closed - Opened by NataliaDelCoco over 3 years ago - 2 comments
Labels: bug 🐞

#40 - Update `independently` codes to consider previously trained model for each region

Issue - State: closed - Opened by NataliaDelCoco over 3 years ago - 1 comment
Labels: feature ✨

#39 - Feature/natalia independent inference

Pull Request - State: closed - Opened by NataliaDelCoco over 3 years ago - 2 comments

#38 - 🐛base-reported was still using old EpidemicStart parameter

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞, feature ✨

#37 - 🔨 Could model_output$out be removed from model_output?

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 1 comment
Labels: feature ✨, open question 💭

#36 - 🐛Script run_single_region throws an error when model is base-reported

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞

#35 - 📇 Redefine versions of epiCata package

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: documentation 📖, feature ✨

#34 - ✨Independent inference for each micro- or macro-region

Issue - State: closed - Opened by jonjoncardoso over 3 years ago - 2 comments
Labels: feature ✨

#33 - 📝Update Tutorial02 (PT-BR)

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: documentation 📖

#32 - 📝Update Tutorial02 (PT-BR): add a simulation that uses Google Mobility

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: documentation 📖

#31 - 📝 Relate R/STAN code with the equations in the paper

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: documentation 📖, good first issue 🤝

#30 - 📝 Add roxygen documentation to the functions in the R package

Issue - State: open - Opened by jonjoncardoso over 3 years ago
Labels: documentation 📖, good first issue 🤝

#29 - 🐛Fixes run_single_region.R

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞

#28 - 🐛 run_single_region.R only works with SC_MAC_GRANDE_FLORIANOPOLIS

Issue - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: bug 🐞

#27 - 🐛 Allow single region runs + Some Bugfixes

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago - 4 comments
Labels: bug 🐞

#26 - Add tutorials

Pull Request - State: closed - Opened by jonjoncardoso over 3 years ago
Labels: feature ✨

#25 - Feature/ch11985/pedro modelo sc limpada no código

Pull Request - State: closed - Opened by phcavelar over 3 years ago - 1 comment

#24 - Feature/ch11606/pedro agregação semanal

Pull Request - State: closed - Opened by phcavelar over 3 years ago - 1 comment

#23 - Feature/ch10973/pedro modelo sc mudar no código para usar o google

Pull Request - State: closed - Opened by phcavelar over 3 years ago - 1 comment

#22 - Updated plots' styling

Pull Request - State: closed - Opened by phcavelar almost 4 years ago

#21 - Pedro/update plots

Pull Request - State: closed - Opened by phcavelar almost 4 years ago

#20 - Updated some plots' styling

Pull Request - State: closed - Opened by phcavelar almost 4 years ago

#19 - Updated some plots' styling

Pull Request - State: closed - Opened by phcavelar almost 4 years ago

#18 - Feature/ch9713/pedro modelo sc retomar a criação do shiny

Pull Request - State: closed - Opened by phcavelar almost 4 years ago - 1 comment

#17 - WIP Feature/ch8334/pedro modelo sc relatório 18 percentual de ocupação

Pull Request - State: closed - Opened by phcavelar about 4 years ago

#16 - Feature/ch7910/pedro modelo sc relatório 17 adicionar uma equação

Pull Request - State: closed - Opened by phcavelar about 4 years ago

#15 - Feature/ch7511/pedro modelo sc alterações no modelo stan

Pull Request - State: closed - Opened by phcavelar about 4 years ago

#14 - Reproduzir log-log plots de artigo da PLoS ONE

Pull Request - State: closed - Opened by jonjoncardoso about 4 years ago
Labels: open question 💭

#13 - Feature/ch7353/pedro modelo sc relatorio 12 tentar carregar informação

Pull Request - State: closed - Opened by phcavelar about 4 years ago