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GitHub / Daniel-Liu-c0deb0t/block-aligner issues and pull requests

#32 - Full C AA API

Pull Request - State: open - Opened by d-cameron 28 days ago

#31 - [BUG] Incorrect index calculation for score matrix setter

Issue - State: closed - Opened by rickbeeloo 3 months ago - 7 comments

#30 - Advice on setting for short query in long reference search

Issue - State: open - Opened by rickbeeloo 3 months ago - 5 comments

#29 - Try out convergence of traceback pointers

Issue - State: open - Opened by Daniel-Liu-c0deb0t 5 months ago

#28 - semi-global alignment

Issue - State: closed - Opened by jianshu93 5 months ago - 6 comments

#27 - Question: Syntax for modifying the nucleotide scoring matrix

Issue - State: open - Opened by nrminor 8 months ago - 3 comments

#26 - Fix: FFI API not available in WASM

Pull Request - State: closed - Opened by milot-mirdita about 1 year ago - 1 comment

#25 - Convenience functions and extra alignment modes

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t over 1 year ago

#24 - `cargo.toml` in `c` directory is detected as duplicate package

Issue - State: closed - Opened by RagnarGrootKoerkamp over 1 year ago - 1 comment

#23 - Recent code updates and fixes

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t over 1 year ago

#22 - Put cbindgen dependency behind a default-enabled feature flag

Pull Request - State: closed - Opened by RagnarGrootKoerkamp over 1 year ago - 1 comment

#21 - fuzzy text finding

Issue - State: open - Opened by Ephilipz almost 2 years ago - 7 comments

#20 - Benchmark global alignment on more ONT reads

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t almost 2 years ago

#19 - Realignment

Issue - State: open - Opened by Daniel-Liu-c0deb0t almost 2 years ago

#18 - question on block aligner score and lowest identity allowed to be accurate

Issue - State: closed - Opened by jianshu93 almost 2 years ago - 6 comments

#17 - aarch64 neon support for block-aligner

Pull Request - State: closed - Opened by milot-mirdita almost 2 years ago - 4 comments

#16 - More visualizations and bug fixes

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t about 2 years ago

#15 - Investigate performance regressions

Issue - State: open - Opened by Daniel-Liu-c0deb0t about 2 years ago

#14 - Use staticlib

Issue - State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago

#13 - Thoughts on relation to / comparison with WFA

Issue - State: open - Opened by rob-p over 2 years ago - 1 comment

#11 - Support for sequence to profile alignments

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago

#10 - Custom AAMatrix from C API?

Issue - State: closed - Opened by smarco over 2 years ago - 7 comments

#9 - `rand_mutate` cannot generate consecutive insertions

Issue - State: closed - Opened by RagnarGrootKoerkamp over 2 years ago - 4 comments

#8 - Allow block size to shrink

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago

#7 - Is there a reason gap_open has to be > gap_extend and not >= gap_extend?

Issue - State: open - Opened by tfenne over 2 years ago - 3 comments

#6 - Allow allocated memory to be reused

Pull Request - State: closed - Opened by Daniel-Liu-c0deb0t almost 3 years ago

#5 - Is using -0.5 as extend penalty supported?

Issue - State: closed - Opened by trevorpfiz almost 3 years ago - 2 comments

#4 - Neon and related

Issue - State: closed - Opened by jianshu93 almost 3 years ago - 4 comments

#3 - Support Alignment of DNA sequences with C API

Issue - State: open - Opened by adcosta17 almost 3 years ago - 2 comments

#1 - Support alignment of protein sequences containing "*"

Issue - State: open - Opened by matchy233 about 3 years ago - 1 comment