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GitHub / Daniel-Liu-c0deb0t/block-aligner issues and pull requests
#32 - Full C AA API
Pull Request -
State: open - Opened by d-cameron 28 days ago
#31 - [BUG] Incorrect index calculation for score matrix setter
Issue -
State: closed - Opened by rickbeeloo 3 months ago
- 7 comments
#30 - Advice on setting for short query in long reference search
Issue -
State: open - Opened by rickbeeloo 3 months ago
- 5 comments
#29 - Try out convergence of traceback pointers
Issue -
State: open - Opened by Daniel-Liu-c0deb0t 5 months ago
#28 - semi-global alignment
Issue -
State: closed - Opened by jianshu93 5 months ago
- 6 comments
#27 - Question: Syntax for modifying the nucleotide scoring matrix
Issue -
State: open - Opened by nrminor 8 months ago
- 3 comments
#26 - Fix: FFI API not available in WASM
Pull Request -
State: closed - Opened by milot-mirdita about 1 year ago
- 1 comment
#25 - Convenience functions and extra alignment modes
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t over 1 year ago
#24 - `cargo.toml` in `c` directory is detected as duplicate package
Issue -
State: closed - Opened by RagnarGrootKoerkamp over 1 year ago
- 1 comment
#23 - Recent code updates and fixes
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t over 1 year ago
#22 - Put cbindgen dependency behind a default-enabled feature flag
Pull Request -
State: closed - Opened by RagnarGrootKoerkamp over 1 year ago
- 1 comment
#21 - fuzzy text finding
Issue -
State: open - Opened by Ephilipz almost 2 years ago
- 7 comments
#20 - Benchmark global alignment on more ONT reads
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t almost 2 years ago
#19 - Realignment
Issue -
State: open - Opened by Daniel-Liu-c0deb0t almost 2 years ago
#18 - question on block aligner score and lowest identity allowed to be accurate
Issue -
State: closed - Opened by jianshu93 almost 2 years ago
- 6 comments
#17 - aarch64 neon support for block-aligner
Pull Request -
State: closed - Opened by milot-mirdita almost 2 years ago
- 4 comments
#16 - More visualizations and bug fixes
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t about 2 years ago
#15 - Investigate performance regressions
Issue -
State: open - Opened by Daniel-Liu-c0deb0t about 2 years ago
#14 - Use staticlib
Issue -
State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago
#13 - Thoughts on relation to / comparison with WFA
Issue -
State: open - Opened by rob-p over 2 years ago
- 1 comment
#12 - Use SCOP dataset for benchmarking sequence to profile alignment
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago
#11 - Support for sequence to profile alignments
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago
#10 - Custom AAMatrix from C API?
Issue -
State: closed - Opened by smarco over 2 years ago
- 7 comments
#9 - `rand_mutate` cannot generate consecutive insertions
Issue -
State: closed - Opened by RagnarGrootKoerkamp over 2 years ago
- 4 comments
#8 - Allow block size to shrink
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t over 2 years ago
#7 - Is there a reason gap_open has to be > gap_extend and not >= gap_extend?
Issue -
State: open - Opened by tfenne over 2 years ago
- 3 comments
#6 - Allow allocated memory to be reused
Pull Request -
State: closed - Opened by Daniel-Liu-c0deb0t almost 3 years ago
#5 - Is using -0.5 as extend penalty supported?
Issue -
State: closed - Opened by trevorpfiz almost 3 years ago
- 2 comments
#4 - Neon and related
Issue -
State: closed - Opened by jianshu93 almost 3 years ago
- 4 comments
#3 - Support Alignment of DNA sequences with C API
Issue -
State: open - Opened by adcosta17 almost 3 years ago
- 2 comments
#2 - Option to reuse memory when block aligner is reallocated
Issue -
State: closed - Opened by Daniel-Liu-c0deb0t about 3 years ago
#1 - Support alignment of protein sequences containing "*"
Issue -
State: open - Opened by matchy233 about 3 years ago
- 1 comment