Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Danderson123/amira issues and pull requests
#51 - Dev
Pull Request -
State: open - Opened by Danderson123 6 days ago
#50 - chore(main): release 0.6.2
Pull Request -
State: closed - Opened by Danderson123 6 days ago
- 1 comment
Labels: autorelease: tagged
#49 - chore(main): release 0.6.2
Pull Request -
State: closed - Opened by Danderson123 6 days ago
Labels: autorelease: pending
#48 - chore(main): release 0.6.1
Pull Request -
State: closed - Opened by Danderson123 6 days ago
- 1 comment
Labels: autorelease: tagged
#47 - chore(main): release 0.6.0
Pull Request -
State: closed - Opened by Danderson123 6 days ago
- 1 comment
Labels: autorelease: tagged
#46 - chore(main): release 0.6.0
Pull Request -
State: closed - Opened by Danderson123 6 days ago
Labels: autorelease: pending
#45 - Dev
Pull Request -
State: closed - Opened by Danderson123 11 days ago
#44 - Merge main
Pull Request -
State: closed - Opened by Danderson123 13 days ago
#43 - chore(main): release 0.5.0
Pull Request -
State: closed - Opened by Danderson123 23 days ago
- 1 comment
Labels: autorelease: tagged
#42 - Dev
Pull Request -
State: closed - Opened by Danderson123 23 days ago
#41 - Merge main
Pull Request -
State: closed - Opened by Danderson123 23 days ago
#40 - chore(main): release 0.5.0
Pull Request -
State: closed - Opened by Danderson123 23 days ago
Labels: autorelease: pending
#39 - chore: fix version
Pull Request -
State: closed - Opened by Danderson123 23 days ago
#38 - chore(main): release 0.5.0
Pull Request -
State: closed - Opened by Danderson123 23 days ago
Labels: autorelease: pending
#37 - Refines the cellular copy number estimates for each AMR gene copy
Pull Request -
State: closed - Opened by Danderson123 23 days ago
#36 - chore(main): release 0.4.1
Pull Request -
State: closed - Opened by Danderson123 2 months ago
- 1 comment
Labels: autorelease: tagged
#35 - fix: use node-space path to estimate copy number in context
Pull Request -
State: closed - Opened by Danderson123 2 months ago
#34 - chore(main): release 0.4.0
Pull Request -
State: closed - Opened by Danderson123 2 months ago
- 1 comment
Labels: autorelease: tagged
#33 - Convert node-space full length paths to gene space and assign reads based on unique subpaths
Pull Request -
State: closed - Opened by Danderson123 2 months ago
#32 - Merge main
Pull Request -
State: closed - Opened by Danderson123 2 months ago
#31 - chore(main): release 0.3.1
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#30 - build(deps): bump tqdm from 4.64.1 to 4.66.3
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#29 - chore(main): release 0.3.1
Pull Request -
State: closed - Opened by Danderson123 3 months ago
Labels: autorelease: pending
#28 - build(deps): bump tqdm from 4.64.1 to 4.66.3
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#27 - chore(main): release 0.3.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#26 - Version bump
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#25 - chore(main): release 0.3.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
Labels: autorelease: pending
#24 - Now uses a suffix tree to get unique paths containing AMR genes in the graph, includes some refactoring.
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#24 - Now uses a suffix tree to get unique paths containing AMR genes in the graph, includes some refactoring.
Pull Request -
State: open - Opened by Danderson123 3 months ago
#23 - Edge case resulting in overestimation of genomic copy number
Issue -
State: closed - Opened by Danderson123 3 months ago
Labels: bug
#23 - Edge case resulting in overestimation of genomic copy number
Issue -
State: open - Opened by Danderson123 3 months ago
Labels: bug
#22 - chore(main): release 0.2.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#22 - chore(main): release 0.2.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#21 - Dev
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#21 - Dev
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#20 - chore(main): release 0.2.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
Labels: autorelease: pending
#20 - chore(main): release 0.2.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
Labels: autorelease: pending
#19 - Adds version number and docs to install from PyPI
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#19 - Adds version number and docs to install from PyPI
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#18 - chore(main): release 0.1.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#18 - chore(main): release 0.1.0
Pull Request -
State: closed - Opened by Danderson123 3 months ago
- 1 comment
Labels: autorelease: tagged
#17 - Add more detailed documentation and reports all equally close AMR gene variants
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#17 - Add more detailed documentation and reports all equally close AMR gene variants
Pull Request -
State: closed - Opened by Danderson123 3 months ago
#16 - Dev
Pull Request -
State: closed - Opened by Danderson123 4 months ago
#16 - Dev
Pull Request -
State: closed - Opened by Danderson123 4 months ago
#15 - fix: edge case in AMR path finding
Pull Request -
State: closed - Opened by Danderson123 7 months ago
#15 - fix: edge case in AMR path finding
Pull Request -
State: closed - Opened by Danderson123 7 months ago
#14 - ci: Adds workflows to push to PyPI, prepare releases and run pre-commit hooks.
Pull Request -
State: closed - Opened by Danderson123 about 1 year ago
#14 - ci: Adds workflows to push to PyPI, prepare releases and run pre-commit hooks.
Pull Request -
State: closed - Opened by Danderson123 about 1 year ago
#13 - FN by length
Issue -
State: closed - Opened by iqbal-lab over 1 year ago
#12 - A wonderful statistic
Issue -
State: closed - Opened by iqbal-lab over 1 year ago
- 10 comments
#11 - Example of pandora inserting gene at start of a read
Issue -
State: closed - Opened by iqbal-lab over 1 year ago
- 2 comments
#10 - Debugging pandora mapping on a second read
Issue -
State: closed - Opened by iqbal-lab over 1 year ago
#9 - Debugging pandora gene calls on real nanopore reads
Issue -
State: closed - Opened by leoisl over 1 year ago
- 19 comments
#8 - Debugging pandora gene calls on real nanopore reads
Issue -
State: closed - Opened by leoisl over 1 year ago
- 53 comments
#7 - Output AMR genes per unitig instead of untitigs per paralog
Issue -
State: closed - Opened by Danderson123 about 2 years ago
Labels: enhancement
#6 - Options
Issue -
State: closed - Opened by iqbal-lab about 2 years ago
- 10 comments
#5 - Adds code to construct a Unitig object and allows extraction of unique paths containing a gene of interest with unit tests..
Pull Request -
State: closed - Opened by Danderson123 about 2 years ago
#4 - Discussing and fixing a possible Gene.__eq__() and Gene.__hash__() bug
Pull Request -
State: closed - Opened by leoisl about 2 years ago
- 5 comments
#3 - Amira classes for building and manipulating a read coherent gene de Bruijn graph
Pull Request -
State: closed - Opened by Danderson123 about 2 years ago
- 1 comment
#2 - Add workflow to automate tests
Pull Request -
State: closed - Opened by Danderson123 about 2 years ago
#1 - Interface proposal
Issue -
State: closed - Opened by Danderson123 about 2 years ago
- 1 comment