Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Dana-Farber-AIOS/pathml issues and pull requests

#436 - Converting to mamba

Pull Request - State: closed - Opened by jamesgwen about 2 months ago - 1 comment

#435 - Minor edits to trigger tests

Pull Request - State: closed - Opened by VarunUllanat 3 months ago - 1 comment

#434 - minor edits

Pull Request - State: closed - Opened by VarunUllanat 4 months ago - 1 comment

#433 - Added workflow for vectra slides

Pull Request - State: closed - Opened by VarunUllanat 5 months ago - 1 comment

#432 - Updated digital pathology assistant to include instructions and link

Pull Request - State: closed - Opened by VarunUllanat 6 months ago - 1 comment

#431 - add Digital Pathology Assistant notebook

Issue - State: closed - Opened by Dana-Farber 6 months ago - 2 comments
Labels: enhancement

#430 - Added 'talk to pathml' example notebook and images

Pull Request - State: closed - Opened by VarunUllanat 6 months ago - 1 comment

#429 - PathML 3.0.0: New Features and User Experience Improvements

Pull Request - State: open - Opened by VarunUllanat 6 months ago - 1 comment

#428 - Small changes to example notebooks

Pull Request - State: closed - Opened by VarunUllanat 6 months ago

#427 - PathML 3.0.0: New Features and User Experience Improvements

Pull Request - State: closed - Opened by VarunUllanat 7 months ago - 1 comment

#426 - Adding windows and MacOS tests to dev_graph

Pull Request - State: closed - Opened by VarunUllanat 7 months ago

#425 - Added git workflow to test on windows

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#424 - Minor changes to tile-stitching error handling

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#423 - Made minor changes to tilestitching error handling

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#422 - Updated example notebook

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#421 - Updated example notebook

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#420 - Updated example notebooks

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#419 - Updated example notebooks

Pull Request - State: closed - Opened by sreekarreddydfci 7 months ago

#418 - Added testcases and updated example notebooks

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#417 - Added testcases and updated example notebooks

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#416 - Update README.md

Pull Request - State: closed - Opened by Dana-Farber 8 months ago

#415 - Added test cases

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#414 - Added test cases

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#413 - Dev graph

Pull Request - State: closed - Opened by VarunUllanat 8 months ago - 1 comment

#412 - Updated Readme

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#411 - Added test cases and bug fixes

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#410 - Added test cases and bug fixes

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#408 - Added additional functionalities

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#407 - Added graph components

Pull Request - State: closed - Opened by sreekarreddydfci 8 months ago

#406 - pachage install bug

Issue - State: open - Opened by Yicijiuhaobala 9 months ago
Labels: bug

#405 - Test PR to trigger GitHub workflows

Pull Request - State: closed - Opened by VarunUllanat 10 months ago - 1 comment

#404 - Test PR to trigger GitHub workflows

Pull Request - State: closed - Opened by VarunUllanat 10 months ago - 1 comment

#403 - documentation updates

Pull Request - State: closed - Opened by sreekarreddydfci 10 months ago

#402 - AttributeError pathml.core

Issue - State: open - Opened by tdenize 10 months ago - 8 comments

#400 - Refactored tile-stitching and testcases code

Pull Request - State: closed - Opened by sreekarreddydfci 10 months ago

#399 - add install instructions for windows

Issue - State: open - Opened by Dana-Farber 10 months ago - 1 comment
Labels: enhancement

#398 - Update Dockerfile

Pull Request - State: open - Opened by sreekarreddydfci 10 months ago

#397 - Merge dev_onnx into dev_graph

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#396 - adding graph + tile stitching to trigger tests #2

Pull Request - State: closed - Opened by VarunUllanat 10 months ago - 1 comment

#395 - adding graph + tile stitching to trigger tests

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#394 - Dev tilestitching

Pull Request - State: closed - Opened by sreekarreddydfci 10 months ago

#393 - Dev tilestitching

Pull Request - State: closed - Opened by sreekarreddydfci 10 months ago

#392 - Dev graph api

Pull Request - State: open - Opened by sreekarreddydfci 10 months ago

#391 - Added tilestitching code

Pull Request - State: closed - Opened by sreekarreddydfci 10 months ago

#390 - Updated skimage version for importing the graph module and trigger tests

Pull Request - State: closed - Opened by VarunUllanat 10 months ago - 2 comments

#389 - Updated skimage version for importing the graph module

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#387 - Changes spams installation in github workflows

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#386 - Test PR for triggering unit tests with skimage flexibility

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#384 - Test PR to trigger tests with updated environment.yml file

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#382 - Test pull request to trigger unit tests for dev_graph

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#381 - Make flake8 compliant and update tests

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#379 - Cleaned up code and added comments and exception handling

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#378 - Adding graph API codebase, tests and notebooks

Pull Request - State: closed - Opened by VarunUllanat 10 months ago

#377 - Update readthedocs-requirements.txt

Pull Request - State: closed - Opened by sreekarreddydfci 11 months ago

#377 - Update readthedocs-requirements.txt

Pull Request - State: closed - Opened by sreekarreddydfci 11 months ago

#376 - bugfix in colab installation instructions in README.md

Pull Request - State: closed - Opened by Dana-Farber 11 months ago

#375 - Algorithm for Improved Spectral Unmixing with Reference Image Integration

Issue - State: open - Opened by sreekarreddydfci 11 months ago
Labels: enhancement

#374 - James gh pages

Pull Request - State: closed - Opened by jamesgwen 11 months ago

#373 - James gh pages

Pull Request - State: closed - Opened by jamesgwen 11 months ago - 1 comment

#372 - Update README.md

Pull Request - State: closed - Opened by jamesgwen 11 months ago - 1 comment

#371 - http://pathml.org/ image broken

Issue - State: closed - Opened by Dana-Farber 11 months ago - 1 comment
Labels: bug

#370 - Add Installation and Setup Instructions for Mamba alongside Conda

Issue - State: open - Opened by sreekarreddydfci 11 months ago - 1 comment
Labels: bug

#369 - Update openslide v4

Pull Request - State: open - Opened by jamesgwen 12 months ago - 1 comment

#368 - Use updated openslide v4.0.0

Issue - State: open - Opened by jacob-rosenthal 12 months ago - 1 comment
Labels: dependencies

#367 - Inference ONNX

Pull Request - State: closed - Opened by jamesgwen about 1 year ago - 1 comment

#366 - Inference

Pull Request - State: closed - Opened by jamesgwen about 1 year ago

#365 - Inference

Pull Request - State: closed - Opened by jamesgwen about 1 year ago

#364 - Unable to read in all image layers in .vdi file, only index 0 is read in

Issue - State: open - Opened by RYY0722 about 1 year ago - 3 comments
Labels: bug

#363 - Implement Tile Stitching Feature in Image Preprocessing

Issue - State: open - Opened by sreekarreddydfci about 1 year ago
Labels: enhancement

#362 - Docker m2

Pull Request - State: open - Opened by jamesgwen about 1 year ago

#361 - Update environment.yml

Pull Request - State: closed - Opened by sreekarreddydfci about 1 year ago - 1 comment

#360 - docker yml file update to support m2 macs

Pull Request - State: closed - Opened by jamesgwen about 1 year ago - 1 comment

#359 - Create pathml-model-zoo.md

Pull Request - State: open - Opened by Dana-Farber about 1 year ago

#358 - Reading WSI with .tif and ome.tiff format

Issue - State: closed - Opened by maryamahz about 1 year ago - 14 comments
Labels: bug

#357 - Make a smaller docker image

Issue - State: open - Opened by Dana-Farber over 1 year ago
Labels: enhancement

#356 - Error with spams package in vahadane stain normalisation with StainNormalizationHE()

Issue - State: closed - Opened by VarunUllanat over 1 year ago - 2 comments
Labels: bug

#355 - allow manual workflow triggering

Pull Request - State: closed - Opened by jacob-rosenthal over 1 year ago - 1 comment

#354 - Update Environment Configuration and Dependencies

Pull Request - State: closed - Opened by sreekarreddydfci over 1 year ago - 1 comment

#353 - Tests are failing

Issue - State: closed - Opened by jacob-rosenthal over 1 year ago - 2 comments

#352 - Update publish-to-pypi.yml

Pull Request - State: closed - Opened by sreekarreddydfci over 1 year ago - 2 comments

#351 - Update _version.py

Pull Request - State: closed - Opened by sreekarreddydfci over 1 year ago - 1 comment

#349 - Update index.md

Pull Request - State: closed - Opened by sreekarreddydfci over 1 year ago

#348 - Fixed docs

Pull Request - State: closed - Opened by sreekarreddydfci over 1 year ago

#347 - v2.1.1

Pull Request - State: closed - Opened by jacob-rosenthal over 1 year ago - 1 comment

#346 - Bump ipython from 7.31.1 to 8.10.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#345 - necrotic tissue detection for HE and multiplex imaging

Issue - State: open - Opened by YubinXie over 1 year ago
Labels: enhancement

#344 - preprocessing on mrxs file get h5 file full of 0

Issue - State: closed - Opened by YubinXie over 1 year ago - 6 comments

#343 - Support GPUs on Docker installation

Issue - State: open - Opened by Dana-Farber over 1 year ago
Labels: enhancement

#342 - How to implement HoVer-Net Model in TIAToolBox?

Issue - State: open - Opened by WilliWespe almost 2 years ago

#341 - indices should be either on cpu or on the same device as the indexed tensor (cpu)

Issue - State: closed - Opened by luzy05111036 almost 2 years ago - 8 comments
Labels: bug

#340 - print c_count.value Missing parentheses in call to 'print'.

Issue - State: closed - Opened by luzy05111036 almost 2 years ago - 3 comments
Labels: bug

#339 - How to train hovernet starting with semantic-level mask image?

Issue - State: open - Opened by OmarAshkar almost 2 years ago - 3 comments
Labels: enhancement

#338 - Deepcell segmentation without cytoplasm channel

Issue - State: open - Opened by jamesMo84 almost 2 years ago - 1 comment
Labels: enhancement