Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Dana-Farber-AIOS/pathml issues and pull requests
#436 - Converting to mamba
Pull Request -
State: closed - Opened by jamesgwen about 2 months ago
- 1 comment
#435 - Minor edits to trigger tests
Pull Request -
State: closed - Opened by VarunUllanat 3 months ago
- 1 comment
#434 - minor edits
Pull Request -
State: closed - Opened by VarunUllanat 4 months ago
- 1 comment
#433 - Added workflow for vectra slides
Pull Request -
State: closed - Opened by VarunUllanat 5 months ago
- 1 comment
#432 - Updated digital pathology assistant to include instructions and link
Pull Request -
State: closed - Opened by VarunUllanat 6 months ago
- 1 comment
#431 - add Digital Pathology Assistant notebook
Issue -
State: closed - Opened by Dana-Farber 6 months ago
- 2 comments
Labels: enhancement
#430 - Added 'talk to pathml' example notebook and images
Pull Request -
State: closed - Opened by VarunUllanat 6 months ago
- 1 comment
#429 - PathML 3.0.0: New Features and User Experience Improvements
Pull Request -
State: open - Opened by VarunUllanat 6 months ago
- 1 comment
#428 - Small changes to example notebooks
Pull Request -
State: closed - Opened by VarunUllanat 6 months ago
#427 - PathML 3.0.0: New Features and User Experience Improvements
Pull Request -
State: closed - Opened by VarunUllanat 7 months ago
- 1 comment
#426 - Adding windows and MacOS tests to dev_graph
Pull Request -
State: closed - Opened by VarunUllanat 7 months ago
#425 - Added git workflow to test on windows
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#424 - Minor changes to tile-stitching error handling
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#423 - Made minor changes to tilestitching error handling
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#422 - Updated example notebook
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#421 - Updated example notebook
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#420 - Updated example notebooks
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#419 - Updated example notebooks
Pull Request -
State: closed - Opened by sreekarreddydfci 7 months ago
#418 - Added testcases and updated example notebooks
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#417 - Added testcases and updated example notebooks
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#416 - Update README.md
Pull Request -
State: closed - Opened by Dana-Farber 8 months ago
#415 - Added test cases
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#414 - Added test cases
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#413 - Dev graph
Pull Request -
State: closed - Opened by VarunUllanat 8 months ago
- 1 comment
#412 - Updated Readme
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#411 - Added test cases and bug fixes
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#410 - Added test cases and bug fixes
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#409 - Unable to Load IMC data (ome.tiff format) properly. Image data appears 0 only...
Issue -
State: open - Opened by Aakanksha-Rana 8 months ago
Labels: bug
#408 - Added additional functionalities
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#407 - Added graph components
Pull Request -
State: closed - Opened by sreekarreddydfci 8 months ago
#406 - pachage install bug
Issue -
State: open - Opened by Yicijiuhaobala 9 months ago
Labels: bug
#405 - Test PR to trigger GitHub workflows
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
- 1 comment
#404 - Test PR to trigger GitHub workflows
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
- 1 comment
#403 - documentation updates
Pull Request -
State: closed - Opened by sreekarreddydfci 10 months ago
#402 - AttributeError pathml.core
Issue -
State: open - Opened by tdenize 10 months ago
- 8 comments
#401 - Compatibility Query: Using PathML for X-Ray Images with Missing 'TotalPixelMatrixRows' Attribute
Issue -
State: open - Opened by xinyuejohn 10 months ago
Labels: bug
#400 - Refactored tile-stitching and testcases code
Pull Request -
State: closed - Opened by sreekarreddydfci 10 months ago
#399 - add install instructions for windows
Issue -
State: open - Opened by Dana-Farber 10 months ago
- 1 comment
Labels: enhancement
#398 - Update Dockerfile
Pull Request -
State: open - Opened by sreekarreddydfci 10 months ago
#397 - Merge dev_onnx into dev_graph
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#396 - adding graph + tile stitching to trigger tests #2
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
- 1 comment
#395 - adding graph + tile stitching to trigger tests
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#394 - Dev tilestitching
Pull Request -
State: closed - Opened by sreekarreddydfci 10 months ago
#393 - Dev tilestitching
Pull Request -
State: closed - Opened by sreekarreddydfci 10 months ago
#392 - Dev graph api
Pull Request -
State: open - Opened by sreekarreddydfci 10 months ago
#391 - Added tilestitching code
Pull Request -
State: closed - Opened by sreekarreddydfci 10 months ago
#390 - Updated skimage version for importing the graph module and trigger tests
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
- 2 comments
#389 - Updated skimage version for importing the graph module
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#388 - Changes spams installation in github workflows and trigger tests
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#387 - Changes spams installation in github workflows
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#386 - Test PR for triggering unit tests with skimage flexibility
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#385 - Added capabilities for all possible versions of skimage and flake8 co…
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#384 - Test PR to trigger tests with updated environment.yml file
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#383 - Updated environment.yml to include flexible numpy and scipy versions
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#382 - Test pull request to trigger unit tests for dev_graph
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#381 - Make flake8 compliant and update tests
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#380 - Remove torchvision dependency in tests and added nn.Module input for …
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#379 - Cleaned up code and added comments and exception handling
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#378 - Adding graph API codebase, tests and notebooks
Pull Request -
State: closed - Opened by VarunUllanat 10 months ago
#377 - Update readthedocs-requirements.txt
Pull Request -
State: closed - Opened by sreekarreddydfci 11 months ago
#377 - Update readthedocs-requirements.txt
Pull Request -
State: closed - Opened by sreekarreddydfci 11 months ago
#376 - bugfix in colab installation instructions in README.md
Pull Request -
State: closed - Opened by Dana-Farber 11 months ago
#375 - Algorithm for Improved Spectral Unmixing with Reference Image Integration
Issue -
State: open - Opened by sreekarreddydfci 11 months ago
Labels: enhancement
#374 - James gh pages
Pull Request -
State: closed - Opened by jamesgwen 11 months ago
#373 - James gh pages
Pull Request -
State: closed - Opened by jamesgwen 11 months ago
- 1 comment
#372 - Update README.md
Pull Request -
State: closed - Opened by jamesgwen 11 months ago
- 1 comment
#371 - http://pathml.org/ image broken
Issue -
State: closed - Opened by Dana-Farber 11 months ago
- 1 comment
Labels: bug
#370 - Add Installation and Setup Instructions for Mamba alongside Conda
Issue -
State: open - Opened by sreekarreddydfci 11 months ago
- 1 comment
Labels: bug
#369 - Update openslide v4
Pull Request -
State: open - Opened by jamesgwen 12 months ago
- 1 comment
#368 - Use updated openslide v4.0.0
Issue -
State: open - Opened by jacob-rosenthal 12 months ago
- 1 comment
Labels: dependencies
#367 - Inference ONNX
Pull Request -
State: closed - Opened by jamesgwen about 1 year ago
- 1 comment
#366 - Inference
Pull Request -
State: closed - Opened by jamesgwen about 1 year ago
#365 - Inference
Pull Request -
State: closed - Opened by jamesgwen about 1 year ago
#364 - Unable to read in all image layers in .vdi file, only index 0 is read in
Issue -
State: open - Opened by RYY0722 about 1 year ago
- 3 comments
Labels: bug
#363 - Implement Tile Stitching Feature in Image Preprocessing
Issue -
State: open - Opened by sreekarreddydfci about 1 year ago
Labels: enhancement
#362 - Docker m2
Pull Request -
State: open - Opened by jamesgwen about 1 year ago
#361 - Update environment.yml
Pull Request -
State: closed - Opened by sreekarreddydfci about 1 year ago
- 1 comment
#360 - docker yml file update to support m2 macs
Pull Request -
State: closed - Opened by jamesgwen about 1 year ago
- 1 comment
#359 - Create pathml-model-zoo.md
Pull Request -
State: open - Opened by Dana-Farber about 1 year ago
#358 - Reading WSI with .tif and ome.tiff format
Issue -
State: closed - Opened by maryamahz about 1 year ago
- 14 comments
Labels: bug
#357 - Make a smaller docker image
Issue -
State: open - Opened by Dana-Farber over 1 year ago
Labels: enhancement
#356 - Error with spams package in vahadane stain normalisation with StainNormalizationHE()
Issue -
State: closed - Opened by VarunUllanat over 1 year ago
- 2 comments
Labels: bug
#355 - allow manual workflow triggering
Pull Request -
State: closed - Opened by jacob-rosenthal over 1 year ago
- 1 comment
#354 - Update Environment Configuration and Dependencies
Pull Request -
State: closed - Opened by sreekarreddydfci over 1 year ago
- 1 comment
#353 - Tests are failing
Issue -
State: closed - Opened by jacob-rosenthal over 1 year ago
- 2 comments
#352 - Update publish-to-pypi.yml
Pull Request -
State: closed - Opened by sreekarreddydfci over 1 year ago
- 2 comments
#351 - Update _version.py
Pull Request -
State: closed - Opened by sreekarreddydfci over 1 year ago
- 1 comment
#350 - Need assistance with running Pathml package via Colab or Docker and resolving errors
Issue -
State: open - Opened by DRSEI over 1 year ago
- 6 comments
#349 - Update index.md
Pull Request -
State: closed - Opened by sreekarreddydfci over 1 year ago
#348 - Fixed docs
Pull Request -
State: closed - Opened by sreekarreddydfci over 1 year ago
#347 - v2.1.1
Pull Request -
State: closed - Opened by jacob-rosenthal over 1 year ago
- 1 comment
#346 - Bump ipython from 7.31.1 to 8.10.0 in /docs
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#345 - necrotic tissue detection for HE and multiplex imaging
Issue -
State: open - Opened by YubinXie over 1 year ago
Labels: enhancement
#344 - preprocessing on mrxs file get h5 file full of 0
Issue -
State: closed - Opened by YubinXie over 1 year ago
- 6 comments
#343 - Support GPUs on Docker installation
Issue -
State: open - Opened by Dana-Farber over 1 year ago
Labels: enhancement
#342 - How to implement HoVer-Net Model in TIAToolBox?
Issue -
State: open - Opened by WilliWespe almost 2 years ago
#341 - indices should be either on cpu or on the same device as the indexed tensor (cpu)
Issue -
State: closed - Opened by luzy05111036 almost 2 years ago
- 8 comments
Labels: bug
#340 - print c_count.value Missing parentheses in call to 'print'.
Issue -
State: closed - Opened by luzy05111036 almost 2 years ago
- 3 comments
Labels: bug
#339 - How to train hovernet starting with semantic-level mask image?
Issue -
State: open - Opened by OmarAshkar almost 2 years ago
- 3 comments
Labels: enhancement
#338 - Deepcell segmentation without cytoplasm channel
Issue -
State: open - Opened by jamesMo84 almost 2 years ago
- 1 comment
Labels: enhancement