Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / DReichLab/AdmixTools issues and pull requests

#101 - examples/qpWave.log is missing

Issue - State: closed - Opened by batelz over 1 year ago - 1 comment

#100 - Warning while using mergeit

Issue - State: open - Opened by ShreyaAdhya over 1 year ago

#99 - Nothing happens when using convertf for PACKEDPED to PACKEDANCESTRYMAP

Issue - State: closed - Opened by vsds92 almost 2 years ago - 2 comments

#98 - only 71 lines and truncated

Issue - State: open - Opened by linhai1221 almost 2 years ago

#97 - Not enough RAM for qpfstats?

Issue - State: closed - Opened by chaddiamond about 2 years ago - 1 comment

#96 - qpAdm - "pop: ??? has sample size 1 and inbreed set" error message

Issue - State: open - Opened by kimgeng5512 about 2 years ago - 2 comments

#95 - something about qpGraph

Issue - State: open - Opened by bighawkin about 2 years ago

#94 - What‘s mean the "best" in the result from the qpDstat?

Issue - State: open - Opened by SLin191 about 2 years ago

#93 - qpDstat Segmentation fault (core dumped)

Issue - State: open - Opened by kimgeng5512 over 2 years ago

#92 - qpWave - Segmentation fault (core dumped)

Issue - State: open - Opened by kimgeng5512 over 2 years ago - 9 comments

#91 - qpAdm: command not found

Issue - State: closed - Opened by Kouremenos over 2 years ago

#90 - Compilation issues on the latest macOS Monterey (M1 Mac)

Issue - State: open - Opened by bodkan over 2 years ago - 1 comment

#89 - warning: bad chrom

Issue - State: open - Opened by nicolasalexandre21 over 2 years ago - 2 comments

#88 - qpF4Ration

Issue - State: open - Opened by yefanglee over 2 years ago

#87 - Issue with directories with spaces during install

Issue - State: open - Opened by wdb07124 almost 3 years ago

#86 - qpadm with single sample - is it possible to run?

Issue - State: closed - Opened by eshab5 almost 3 years ago - 2 comments

#85 - zsh: segmentation fault (core dumped)

Issue - State: open - Opened by Wennie-s almost 3 years ago - 1 comment

#83 - Negative outgroup f3 statistics

Issue - State: closed - Opened by sallycylau about 3 years ago

#81 - some questions about result of D-statistics(qpDstat)

Issue - State: open - Opened by kuangzhuoran over 3 years ago - 1 comment

#80 - instaling openblas on mac

Issue - State: closed - Opened by ybrandvain over 3 years ago - 1 comment

#79 - Error in the source code?

Issue - State: closed - Opened by teepean over 3 years ago - 1 comment

#78 - qpDstat not using numchrom from parameter file

Issue - State: closed - Opened by jooppenh over 3 years ago - 2 comments

#77 - qpDstat not producing any D-statistics result

Issue - State: open - Opened by MrLocuace over 3 years ago

#76 - Potentially a serious issue with Eigenstrat to Plink conversions

Issue - State: open - Opened by geneanalyst over 3 years ago - 2 comments

#74 - Best practices for converting plink bed bim fam to geno snp ind

Issue - State: open - Opened by geneanalyst over 3 years ago - 3 comments

#73 - Do any of the tools require genetic map distances for accuracy

Issue - State: closed - Opened by geneanalyst over 3 years ago - 4 comments

#72 - AdmixTools For Windows

Issue - State: open - Opened by josephresearcher almost 4 years ago

#71 - Feature suggestion (qpGraph): make labels available in .log file

Issue - State: closed - Opened by TobiasGold almost 4 years ago - 2 comments

#70 - Killed error on qpdstat

Issue - State: closed - Opened by geneanalyst almost 4 years ago - 6 comments

#68 - AABB/BBAA sites

Issue - State: closed - Opened by qhelleu about 4 years ago - 1 comment

#67 - Geno to VCF conversion

Issue - State: open - Opened by TD-lab-Wu over 4 years ago - 1 comment

#66 - multiple deffinition of wynn

Issue - State: open - Opened by EricDeveaud over 4 years ago

#65 - Release archive 6.0 does not build convertf, mergeit nor rollof

Issue - State: closed - Opened by EricDeveaud over 4 years ago - 1 comment

#64 - Installing openblas on Mac

Issue - State: closed - Opened by JasonAHodgson over 4 years ago - 1 comment

#63 - how can I properly get installed admixr into R? error: qpDstat when D

Issue - State: closed - Opened by carlosug over 4 years ago - 8 comments

#62 - Install issue

Issue - State: open - Opened by aromaze85 over 4 years ago - 2 comments

#61 - fatalx: No samples:

Issue - State: open - Opened by syauwjl over 4 years ago - 1 comment

#60 - fatalx: (ineigenstrat) too many lines in file

Issue - State: open - Opened by syauwjl over 4 years ago - 2 comments

#59 - qpDstats produced strange results for some combination of species

Issue - State: open - Opened by smallfishcui almost 5 years ago - 5 comments

#58 - Does three population test can provide the direction of gene flow?

Issue - State: closed - Opened by biozzq almost 5 years ago - 2 comments

#57 - All D-stat values are zero

Issue - State: open - Opened by cdomsar almost 5 years ago - 6 comments

#56 - all individuals set ignore. Likely input problem (col 6)

Issue - State: open - Opened by orient100 almost 5 years ago - 1 comment

#55 - output explanation

Issue - State: open - Opened by liufy11 about 5 years ago - 1 comment

#54 - bad chrom

Issue - State: open - Opened by maernster about 5 years ago - 19 comments

#53 - qpGraph showing worst f statistic with repeated populations

Issue - State: open - Opened by angelesdecara about 5 years ago - 1 comment

#52 - Some issue about the software

Issue - State: open - Opened by HuangMin0702 over 5 years ago - 2 comments

#51 - Documented qpWave/Adm allsnps: & chrom: options

Pull Request - State: closed - Opened by TCLamnidis over 5 years ago - 1 comment

#50 - Haploid setting?

Issue - State: closed - Opened by DinRigtigeFar over 5 years ago - 2 comments

#49 - qpAdm: Option missing from documentation

Issue - State: open - Opened by TCLamnidis over 5 years ago - 1 comment

#48 - Ubuntu installation error and solution

Issue - State: closed - Opened by owensgl over 5 years ago - 2 comments

#47 - Segmentation fault - qp3pop and qpF4ratio

Issue - State: open - Opened by juanita14 almost 6 years ago - 1 comment

#46 - add switch to avoid core dump generation

Pull Request - State: closed - Opened by EricDeveaud almost 6 years ago

#45 - Release archive 5.1 does not build convertf nor mergeit

Issue - State: closed - Opened by EricDeveaud almost 6 years ago - 2 comments

#44 - f2 from qpgraph with NULL as outgroup

Issue - State: open - Opened by ChiChunLiu almost 6 years ago - 1 comment

#43 - please release executable files

Issue - State: closed - Opened by JPingAMMS about 6 years ago - 1 comment

#42 - add help to programs

Pull Request - State: closed - Opened by EricDeveaud over 6 years ago

#41 - ignore new binaries

Pull Request - State: closed - Opened by EricDeveaud over 6 years ago

#40 - fatalx :: avoid coredump

Issue - State: closed - Opened by EricDeveaud over 6 years ago - 2 comments

#39 - qpAdm p-values

Issue - State: open - Opened by geneanalyst over 6 years ago

#38 - Qpdstat error msg

Issue - State: closed - Opened by geneanalyst over 6 years ago - 6 comments

#37 - Issue with qpDstat

Issue - State: open - Opened by Aljumiliy1 over 6 years ago - 3 comments

#36 - How to performe D-stats without chromosome information?

Issue - State: open - Opened by asassone almost 7 years ago - 2 comments

#35 - The results from F4-ratio and D-statistic are different

Issue - State: open - Opened by biozzq almost 7 years ago - 1 comment

#34 - D-statistics (qpDstat)

Issue - State: open - Opened by kafka2184 almost 7 years ago - 2 comments

#33 - qp3pop // warning: dubious parameter

Issue - State: closed - Opened by kafka2184 almost 7 years ago - 2 comments

#32 - qpAdm annotated log file missing

Issue - State: closed - Opened by francescomontinaro almost 7 years ago - 1 comment

#31 - mac install issue

Issue - State: closed - Opened by vvv214 almost 7 years ago - 1 comment

#30 - Extension of model-based clustering methods

Issue - State: open - Opened by ADormant about 7 years ago

#27 - Run error for qpWave

Issue - State: open - Opened by albeele1 over 7 years ago - 7 comments

#26 - how to explain the D-stastics result

Issue - State: closed - Opened by XuexueLiu over 7 years ago - 4 comments

#25 - Issue make install

Issue - State: closed - Opened by andalusi-ink over 7 years ago

#24 - qpAdm sometimes copies admixture proportions in other lines

Issue - State: closed - Opened by TCLamnidis over 7 years ago - 8 comments

#23 - qpF4ratio

Issue - State: open - Opened by JhinAir over 7 years ago - 2 comments

#22 - D-statistics used in small number of SNPs

Issue - State: closed - Opened by silvewheat over 7 years ago - 2 comments

#21 - The Outgroup f3 statistic result is inconsistent with the NJ tree

Issue - State: open - Opened by ghost over 7 years ago - 3 comments

#20 - F3 test detect somewhat ancient gene flow

Issue - State: open - Opened by biozzq over 7 years ago - 6 comments

#19 - Outgroup choosing for Outgroup F3 Statistics

Issue - State: closed - Opened by hssKK over 7 years ago - 7 comments

#18 - fix buffer overrun of initvmix's ww2 vector

Pull Request - State: closed - Opened by jrandall over 7 years ago - 1 comment

#17 - qpGraph: free(): invalid next size (fast)

Issue - State: open - Opened by jrandall over 7 years ago - 5 comments

#16 - Using sliding window to run admixtools to detect unusual regions

Issue - State: open - Opened by liujing251614 over 7 years ago - 2 comments

#15 - bad chrom error - fstats

Issue - State: open - Opened by SusanaFreitas over 7 years ago

#14 - consistent results between High density SNPs and thinned SNPs

Issue - State: closed - Opened by biozzq over 7 years ago - 1 comment

#13 - qp3Pop report no data for many population groups

Issue - State: closed - Opened by biozzq over 7 years ago - 4 comments

#12 - Rolloff - fatalx: too few snps

Issue - State: open - Opened by shubhamsaini almost 8 years ago - 1 comment

#11 - genetic position in .snp file

Issue - State: closed - Opened by shubhamsaini almost 8 years ago - 3 comments

#10 - example data files

Issue - State: closed - Opened by shubhamsaini almost 8 years ago - 2 comments

#9 - install problem

Issue - State: closed - Opened by llq0325 almost 8 years ago - 13 comments

#8 - What's the meaning that the F4RatioTest's output is -ve or bigger than 1?

Issue - State: closed - Opened by liujing251614 about 8 years ago - 1 comment

#7 - questions about the parameters deposited in converf

Issue - State: closed - Opened by biozzq about 8 years ago - 10 comments

#6 - Makefile contains rule for qpWave, but source file does not exist.

Issue - State: closed - Opened by rekado about 8 years ago

#5 - License conflict

Issue - State: open - Opened by rekado about 8 years ago - 1 comment

#4 - Positional linkers in Makefile for Linux

Issue - State: closed - Opened by dilut about 8 years ago

#3 - Example data directory

Issue - State: closed - Opened by biologyguy over 8 years ago - 4 comments

#2 - qpAdm source file is missing

Issue - State: closed - Opened by biogberg almost 9 years ago - 2 comments

#1 - rolloff outputs gmon.out

Issue - State: closed - Opened by jlrf98 over 9 years ago - 1 comment