DOI-USGS/streamMetabolizer issues and pull requests

#427 - GH Actions

Pull Request - State: open - Opened by ldecicco-USGS over 1 year ago

#426 - pkgdown clean, init, build site again

Pull Request - State: closed - Opened by aappling-usgs over 1 year ago

#425 - Transitioning docs to github actions

Pull Request - State: closed - Opened by aappling-usgs over 1 year ago - 2 comments

#424 - Update code.json

Pull Request - State: closed - Opened by jpadilla-usgs over 1 year ago

#423 - Update pkgdown docs

Pull Request - State: closed - Opened by aappling-usgs over 1 year ago

#422 - R4.3

Pull Request - State: closed - Opened by aappling-usgs over 1 year ago - 1 comment

#421 - change from "master" to "main" default branch in CI

Pull Request - State: closed - Opened by aappling-usgs over 1 year ago

#420 - Prepare for Upcoming DGEC Transition

Pull Request - State: closed - Opened by jesse-ross over 1 year ago

#418 - Bayes metab issues

Issue - State: open - Opened by miralha almost 2 years ago - 1 comment

#417 - Bayes modeling not working?

Issue - State: closed - Opened by woodwardb1 about 2 years ago - 4 comments

#416 - package is not available (for R version 3.3.2)

Issue - State: closed - Opened by mlbrooks about 2 years ago - 13 comments

#415 - Starting DO values for predict_DO

Issue - State: open - Opened by aaroncpelly over 2 years ago

#414 - Non-Zero Exit Status

Issue - State: open - Opened by Justin495 almost 3 years ago - 1 comment

#411 - NOTICE: upcoming default branch name change

Issue - State: closed - Opened by jesse-ross almost 3 years ago - 2 comments

#410 - R4.1

Pull Request - State: closed - Opened by aappling-usgs over 3 years ago

#409 - Incompatibility new release R 4.1.0

Issue - State: closed - Opened by sophieguillon over 3 years ago - 6 comments

#408 - Strong relationship ER and K600.

Issue - State: open - Opened by demelo-limno over 3 years ago - 1 comment

#407 - Package has not been updated for R Version 3.6.1

Issue - State: closed - Opened by agcfzk over 3 years ago - 2 comments

#406 - SYNTAX ERROR, MESSAGE(S) FROM PARSER when editing the ER function in the metab_bayes to (q10temp)

Issue - State: open - Opened by amina-uwa almost 4 years ago

#405 - MLE GPP_fun='satlightq10temp' : issue with GPP (GPP=0, no initialization)

Issue - State: open - Opened by sophieguillon almost 4 years ago

#404 - Errors: vector memory exhausted (limit reached?)

Issue - State: open - Opened by robohall almost 4 years ago - 1 comment

#402 - tidyverse deprecations

Issue - State: open - Opened by aappling-usgs almost 4 years ago

#401 - Installation concern

Issue - State: closed - Opened by mclean-154 about 4 years ago - 1 comment

#400 - metab_night calc of metabolism giving NA's

Issue - State: open - Opened by AbigailUVM about 4 years ago

#399 - Positive Estimating of ER

Issue - State: open - Opened by Jakob10er about 4 years ago

#398 - Error in get_params.metab_model(object, uncertainty = "ci", fixed = "stars", : can't find metabolism parameters GPP.daily, ER.daily, K600.daily

Issue - State: open - Opened by AbigailUVM about 4 years ago

#397 - Can't find metabolism parameters GPP.daily, ER.daily, K600.daily Error

Issue - State: open - Opened by AbigailUVM about 4 years ago

#396 - Data preperation

Issue - State: closed - Opened by Jakob10er about 4 years ago - 2 comments

#395 - Issues with "streamMetabolizer" data format?

Issue - State: closed - Opened by nuwanma1986 over 4 years ago - 2 comments

#394 - Calculate light data for entire 'solar.time' column instead doing one by one?

Issue - State: closed - Opened by nuwanma1986 over 4 years ago - 2 comments

#393 - Model estimation of model dissolved oxygen cuts off between days + dO/dt units check

Issue - State: closed - Opened by amina-uwa over 4 years ago - 5 comments

#392 - can not run streamMetabolism successfully (do not know how to convert 'unique(data_all$date)' to class “Date”)

Issue - State: closed - Opened by JunjieLiu-WHU-UWA over 4 years ago

#391 - DO.mod in predict_DO for Bayesian model

Issue - State: closed - Opened by Tzu-Yao over 4 years ago - 2 comments

#390 - Signal strength, Error assumptions, and MCMC convergence

Issue - State: open - Opened by Tzu-Yao over 4 years ago - 14 comments

#389 - How To Test The Goodness of The Model

Issue - State: open - Opened by kqasem over 4 years ago - 7 comments

#388 - How to fill missing input data

Issue - State: open - Opened by kqasem over 4 years ago - 3 comments

#387 - Error in as.Date.default(unique(data_all$date)) when model fitting

Issue - State: closed - Opened by cltorrens over 4 years ago - 6 comments

#386 - Installation correction

Pull Request - State: closed - Opened by aappling-usgs over 4 years ago

#385 - update vignettes and add pkgdown

Pull Request - State: closed - Opened by aappling-usgs over 4 years ago - 1 comment

#384 - update tag and news for release

Pull Request - State: closed - Opened by aappling-usgs over 4 years ago - 3 comments

#383 - Unable to grab example data frames

Issue - State: closed - Opened by dmcostello over 4 years ago - 1 comment

#382 - fix bug in data_metab

Pull Request - State: closed - Opened by aappling-usgs about 5 years ago

#381 - Calculation of SD and CI in get_params

Issue - State: closed - Opened by PsaltakisJ about 5 years ago - 3 comments

#380 - predict_metab omits MLE errors

Issue - State: open - Opened by aappling-usgs over 5 years ago

#379 - Addressing model warnings and errors

Issue - State: closed - Opened by emjbarrie over 5 years ago - 2 comments

#378 - Problems estimating GPP and ER in artifical, non-mixing containers

Issue - State: open - Opened by mluerig almost 6 years ago - 3 comments

#377 - adjustments for gpp process error

Issue - State: open - Opened by aappling-usgs about 6 years ago - 2 comments

#376 - implement daytime process error bayesian models (err_proc_dayiid=T)

Pull Request - State: closed - Opened by aappling-usgs about 6 years ago - 2 comments

#375 - Satlight bayes scaled

Pull Request - State: closed - Opened by aappling-usgs about 6 years ago - 1 comment

#374 - Depth 0

Pull Request - State: closed - Opened by aappling-usgs about 6 years ago - 1 comment

#373 - Setting priors for K

Issue - State: open - Opened by samlbickley about 6 years ago - 10 comments

#372 - Fixing K for bayes

Issue - State: closed - Opened by brodonnell about 6 years ago - 2 comments

#371 - add Bayesian light saturation model

Issue - State: closed - Opened by aappling-usgs over 6 years ago - 4 comments

#370 - doc & vignette updates

Pull Request - State: closed - Opened by aappling-usgs over 6 years ago

#369 - Update disclaimer

Issue - State: closed - Opened by ldecicco-USGS over 6 years ago - 1 comment

#368 - Hourly data for streamMetabolizer

Issue - State: closed - Opened by CasieSmith over 6 years ago - 1 comment

#367 - wrong DO.sat predictions / positive ER estimates

Issue - State: closed - Opened by mluerig over 6 years ago - 14 comments

#366 - KO2 conv warnings

Pull Request - State: closed - Opened by aappling-usgs almost 7 years ago

#365 - extend travis_wait for r cmd check

Pull Request - State: closed - Opened by aappling-usgs almost 7 years ago

#364 - update documentation

Pull Request - State: closed - Opened by aappling-usgs almost 7 years ago

#363 - update documentation

Pull Request - State: closed - Opened by aappling-usgs almost 7 years ago

#362 - what does "overall warnings" mean?

Issue - State: closed - Opened by Kelsman28 about 7 years ago - 1 comment

#361 - check for daily light <= 0

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#360 - check for daily light <= 0, report error within completed model object

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#359 - MLE model works with example data but bayes model does not because "can't find metabolism parameters GPP.daily, ER.daily, K600.daily"

Issue - State: closed - Opened by Kelsman28 about 7 years ago - 1 comment

#358 - fix units info in predict_metab help file

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#357 - units fix in ?predict_metab

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#356 - bugfix for the light modelers

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#355 - just git merges (no file changes)

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago

#354 - bugfix for the light modelers

Pull Request - State: closed - Opened by aappling-usgs about 7 years ago - 1 comment

#353 - add link to pic in readme

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#352 - issue with get_units, new user

Issue - State: closed - Opened by akdodd over 7 years ago - 1 comment

#351 - README adjustments

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#350 - cosmetic improvements

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#349 - package status communication

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#348 - minor maintenance

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#347 - small tweek in readme

Pull Request - State: closed - Opened by ldecicco-USGS over 7 years ago

#346 - minor bug fixes & enhancements

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#345 - minor plotting enhancements for AJ

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago - 1 comment

#344 - plot_DO_preds is breaking with dygraphs

Issue - State: closed - Opened by aappling-usgs over 7 years ago

#343 - plot_DO_preds could accept date_start and date_end

Issue - State: closed - Opened by aappling-usgs over 7 years ago

#342 - updates for custom Bayesian lightsat models & tests

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#341 - 0.10.2: bug fix in get_params + test for length<0 days in mm_model_by_ply

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago - 1 comment

#340 - add check for if date_end < date_start

Pull Request - State: closed - Opened by weisoon over 7 years ago - 3 comments

#339 - model version for april 2017 condor run3

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#338 - debugging for condor run3

Pull Request - State: closed - Opened by aappling-usgs over 7 years ago

#337 - Error in c(x, sep = "\r") : could not find symbol "recursive" in environment of the generic function

Issue - State: closed - Opened by mluerig over 7 years ago - 15 comments

#336 - Number of rows for different dates

Issue - State: closed - Opened by berdaniera over 7 years ago - 2 comments

#335 - label daily preds unc as SE, not SD

Issue - State: open - Opened by aappling-usgs over 7 years ago

#334 - plot_daily

Issue - State: open - Opened by aappling-usgs over 7 years ago

#326 - Create a check for day_end < day_start

Issue - State: closed - Opened by aappling-usgs over 7 years ago - 1 comment
Labels: help wanted, beginner

#301 - bayes: give better error message on printout when modeling fails

Issue - State: closed - Opened by aappling-usgs almost 8 years ago - 1 comment

#294 - improve plot_DO_preds for pi, oipi, and sim models

Issue - State: open - Opened by aappling-usgs almost 8 years ago - 2 comments

#293 - inst fit for n-1 params

Issue - State: closed - Opened by aappling-usgs almost 8 years ago - 4 comments

#282 - rename Kn to Km

Issue - State: closed - Opened by aappling-usgs about 8 years ago - 1 comment
Labels: wontfix

#265 - switch from coef_GPP, coef_ER, etc. to flexible equations for GPP and ER

Issue - State: closed - Opened by aappling-usgs about 8 years ago - 2 comments

#244 - combine runstan_bayes and mcmc_bayes

Issue - State: closed - Opened by aappling-usgs about 8 years ago - 2 comments

#225 - possible deSolve issue

Issue - State: open - Opened by aappling-usgs about 8 years ago - 4 comments

#206 - use pre-compiled stan models when possible

Pull Request - State: closed - Opened by aappling-usgs over 8 years ago - 1 comment

#173 - vignette on fitting hierarchical K

Issue - State: open - Opened by aappling-usgs over 8 years ago - 2 comments
Labels: ready, docs & usability

GitHub / DOI-USGS/streamMetabolizer issues and pull requests