DIAGNijmegen/picai_prep issues and pull requests

#53 - Update README.md with Lancet Onc bib

Pull Request - State: closed - Opened by anindox8 8 months ago

#52 - Documentation bugfix

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#51 - Dataset.json file cannot be found during nnU-Net Raw Data Archive → nnDetection Raw Data Archive conversion.

Issue - State: closed - Opened by Shammasjaved over 1 year ago - 2 comments

#50 - Allow dataset.json creation without labels

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#49 - dcm2mha conversion not implemented?

Issue - State: closed - Opened by PaWeRe almost 2 years ago - 2 comments

#48 - Create picai_prep.yaml

Pull Request - State: closed - Opened by snorthman almost 2 years ago - 1 comment

#47 - Refactor splitting

Pull Request - State: closed - Opened by snorthman almost 2 years ago - 2 comments

#46 - dcm2mha type hinting and output filename

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#45 - Remove common prefixes from filenames

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#44 - mha2nnunet: reduce logging about skipping cases

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#43 - Update README with dcm2mha options

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#42 - Reduce memory usage

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#41 - dcm2mha memory leak

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#40 - Restructure how localizer slices are removed

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#39 - dcm2mha: remove localizer slices, improve logging

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#38 - Atomic operations consistency

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#37 - fast forward

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#36 - Cross-platform consistency with Windows

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#35 - Mha2nnunet skip converted cases

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#34 - Cross-platform consistency with Windows

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#33 - allow for sanity testing

Pull Request - State: closed - Opened by snorthman about 2 years ago - 4 comments

#32 - Logging mha2nnunet

Pull Request - State: closed - Opened by joeranbosma about 2 years ago - 4 comments

#31 - Verify DICOM filenames bugfix

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#30 - Unit test failure

Issue - State: closed - Opened by v0lta over 2 years ago - 1 comment

#29 - Improve robustness

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#28 - Question regarding the generation of the preprocessing.json file

Issue - State: closed - Opened by bwich over 2 years ago - 4 comments

#27 - Read dicom zip

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 3 comments

#26 - Generate dataset.json from command line interface

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#25 - Bugfix preprocessing

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#24 - AbdomenMRUS-prostate-segmentation

Issue - State: closed - Opened by jakubMitura14 over 2 years ago - 1 comment

#23 - Refactor tidy up

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#22 - Implement Dicom2DCE Conversion

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#21 - Refactor dce conversion

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#20 - Retain all dicom tags

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#19 - Fast forward

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#18 - Move stuff around

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#17 - Refactor mha2nnunet

Pull Request - State: closed - Opened by snorthman over 2 years ago

#16 - Refactor dce conversion

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 3 comments

#15 - Refactor cleanup

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#14 - Initialize cases within multiprocessing

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#13 - Command line interface update

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#12 - Refactor value matching & make user-configurable

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#11 - Refactor explicit

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 2 comments

#10 - Proposed refactor (see notes)

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 1 comment

#9 - Simpler tiebreaker function for resolve duplicates

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 1 comment

#8 - Refactor

Pull Request - State: closed - Opened by snorthman over 2 years ago
Labels: duplicate

#7 - Refactor

Pull Request - State: closed - Opened by snorthman over 2 years ago - 3 comments

#6 - Crop to physical space

Pull Request - State: closed - Opened by joeranbosma over 2 years ago - 3 comments

#5 - dcm2mha preprocessing

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#4 - ADC rescale/intercept

Issue - State: closed - Opened by joeranbosma over 2 years ago - 1 comment
Labels: bug

#3 - Multiprocessing for dcm2mha and mha2nnunet

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#2 - make resolve_duplicates optional

Pull Request - State: closed - Opened by snorthman over 2 years ago

#1 - New preprocessing strategy

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

GitHub / DIAGNijmegen/picai_prep issues and pull requests