Ecosyste.ms: Issues

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GitHub / DIAGNijmegen/picai_baseline issues and pull requests

#57 - Overfitting Issue with PICAI Baseline Model nnDetection

Issue - State: closed - Opened by CollapsarEcho 3 months ago - 2 comments

#56 - Update README.md with Lancet Onc bib

Pull Request - State: closed - Opened by anindox8 5 months ago

#55 - Update version picai_baseline

Pull Request - State: closed - Opened by joeranbosma 7 months ago

#54 - AttributeError in MultiThreadedAugmenter during UNet training.

Issue - State: closed - Opened by buraknebio about 1 year ago - 5 comments

#53 - Unet train error at focal.py

Issue - State: closed - Opened by MuhammedPesen about 1 year ago - 2 comments

#52 - Documentation

Pull Request - State: closed - Opened by joeranbosma about 1 year ago

#51 - UNet training returns ValueError shape mismatch

Issue - State: closed - Opened by shebna12 about 1 year ago - 2 comments

#50 - Bugfix one-hot encoding of targets

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#49 - UNet evaluation fix

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#48 - nnDet training docker

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#47 - No encoding for DataFrame.to_excel()

Issue - State: closed - Opened by loki-veera over 1 year ago - 1 comment

#46 - Inference with pre-trained ensembled nnUNet

Issue - State: closed - Opened by PaWeRe over 1 year ago - 6 comments

#45 - Running baseline models on cpu not possible with nvidia docker base image

Issue - State: closed - Opened by PaWeRe over 1 year ago - 2 comments

#44 - Update documentation on Folder Structure

Pull Request - State: closed - Opened by joeranbosma over 1 year ago - 1 comment

#43 - wrong path to labels when running preprocessing with prepare_data.py

Issue - State: closed - Opened by PaWeRe over 1 year ago - 2 comments

#42 - nnUNet training pipeline

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#41 - Preprocessing cleanup

Pull Request - State: closed - Opened by joeranbosma over 1 year ago - 1 comment

#40 - Flexibility splits specification

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#39 - SageMaker training update

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#38 - `nndet prep_train` fails using local Dockerfile

Issue - State: closed - Opened by alexandreroutier over 1 year ago - 3 comments

#37 - Flexibility

Pull Request - State: closed - Opened by joeranbosma over 1 year ago

#36 - plans.pkl file

Issue - State: closed - Opened by sulaimanvesal almost 2 years ago - 1 comment

#35 - Additional documentation SageMaker

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#34 - Preprocessing flexibility

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#33 - SageMaker training pipeline

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago - 1 comment

#32 - SageMaker training

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#31 - UNet training Docker

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#30 - UNet training flexibility

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#29 - nnU-Net evaluation flexibility

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#28 - nnU-Net and nnDetection cropped training

Pull Request - State: closed - Opened by joeranbosma almost 2 years ago

#27 - which data dir as the input dir we should use for inference

Issue - State: closed - Opened by Chacha-Chen about 2 years ago - 1 comment

#26 - Sagemaker training part2

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#25 - Update

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#24 - Wrong focal loss in unet training.

Issue - State: closed - Opened by quqixun about 2 years ago - 1 comment

#23 - nndet_generate_detection_maps.py memory problems

Issue - State: closed - Opened by brambozz about 2 years ago - 1 comment

#22 - Update

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#21 - PI-CAI PubPrivTrain cross-validation splits

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#20 - up

Pull Request - State: closed - Opened by jakubMitura14 about 2 years ago - 1 comment

#19 - Fix UNet path handling

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#18 - SageMaker training - part 1

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#17 - requirements.txt missing libraries

Issue - State: closed - Opened by Chrisini about 2 years ago - 3 comments

#16 - Command line options for preprocessing settings

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#15 - I am unable to run this.

Issue - State: closed - Opened by muttequrashi about 2 years ago - 3 comments

#14 - Improve flexibility of training nnU-Net

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#13 - Bugfix preprocessing

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#12 - Fix for nnU-Net inference softmax

Pull Request - State: closed - Opened by joeranbosma about 2 years ago

#11 - Difficulties directly using the pretrained models

Issue - State: closed - Opened by demcbs over 2 years ago

#10 - Exclude Case which can't be Preprocessed w/ Baseline U-Net

Pull Request - State: closed - Opened by anindox8 over 2 years ago

#9 - Error when running `python src/picai_baseline/unet/plan_overview.py`

Issue - State: closed - Opened by Kyfafyd over 2 years ago - 2 comments

#8 - How to use the semi-supervised baseline?

Issue - State: closed - Opened by Kyfafyd over 2 years ago - 15 comments

#7 - Semi supervised learning scripts

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#6 - Bugfix

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#5 - Update documentation

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#4 - Cleanup UNet training script

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#3 - Update documentation, export CV splits, inference code

Pull Request - State: closed - Opened by joeranbosma over 2 years ago

#2 - Update Command Line Arguments

Pull Request - State: closed - Opened by anindox8 over 2 years ago - 2 comments

#1 - Update Documentation to Account for Independent GC Algorithm Repos

Pull Request - State: closed - Opened by anindox8 over 2 years ago