Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ContentMine/getpapers issues and pull requests

#193 - Wrong paper is downloaded

Issue - State: closed - Opened by raffaem almost 3 years ago - 9 comments

#192 - Outdated packages (security issues)

Issue - State: open - Opened by raffaem almost 3 years ago

#191 - getpapers 'JavaScript heap out of memory error'

Issue - State: open - Opened by J-E-J-S over 3 years ago - 3 comments

#190 - Problem with logical restriction (AND) in europepmc

Issue - State: open - Opened by silviaegt over 3 years ago - 1 comment

#189 - Bump lodash from 3.10.1 to 4.17.19

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#188 - Getpapers hangs running through vpn

Issue - State: open - Opened by ZeyangCharlesLi over 4 years ago

#187 - Syntax error with getpapers minimal usage

Issue - State: open - Opened by mtdunstan over 4 years ago - 1 comment

#186 - Added default value for -k parameter

Pull Request - State: open - Opened by ziflex over 4 years ago

#185 - Added Dockerfile

Pull Request - State: open - Opened by ziflex over 4 years ago

#184 - Journal specific queries in `getpapers`

Issue - State: closed - Opened by AmbrineH over 4 years ago - 1 comment

#183 - User-side feedback

Issue - State: open - Opened by dmitriz over 4 years ago - 3 comments

#182 - Potentially unhandled rejection - invalid string length

Issue - State: closed - Opened by J-E-J-S almost 5 years ago - 5 comments

#181 - Bump lodash from 3.10.1 to 4.17.15

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#176 - Fix command to run local test of getpapers in CONTRIBUTING.md

Pull Request - State: open - Opened by sdruskat over 5 years ago

#175 - IEEE API throws error

Issue - State: open - Opened by sdruskat over 5 years ago - 5 comments

#174 - Error: EACCES: permission denied (cannot mkdir for results)

Issue - State: open - Opened by petermr over 5 years ago

#173 - Hyperlink DOIs against preferred resolver

Pull Request - State: closed - Opened by katrinleinweber over 6 years ago - 5 comments

#172 - Update EUPMC API to 5.3.2 (January 2018). Update query URL syntax.

Pull Request - State: closed - Opened by jkbcm over 6 years ago - 1 comment

#171 - EUPMC version updated to 5.3.2 January 2018

Issue - State: closed - Opened by jkbcm over 6 years ago

#170 - Potentially unhandled rejection - Error: socket hang up

Issue - State: closed - Opened by lsm35 over 6 years ago - 1 comment

#169 - Use https to Fix 168

Pull Request - State: closed - Opened by tarrow almost 7 years ago

#168 - EuropePMC now needs SSL

Issue - State: closed - Opened by tarrow almost 7 years ago

#166 - Corrupt PDFs from EuropePMC

Issue - State: open - Opened by petermr about 7 years ago - 7 comments

#165 - Use consistent variable name casing

Issue - State: open - Opened by larsgw over 7 years ago

#164 - Running getpapers produces nothing, not even with --help

Issue - State: closed - Opened by mw55309 over 7 years ago - 3 comments

#163 - Enable tests and fix misreported hitcounts from eupmc

Pull Request - State: closed - Opened by tarrow over 7 years ago

#162 - Failure when EuPMC doesn't correctly report the number of hits

Issue - State: closed - Opened by tarrow over 7 years ago

#161 - Standardise on Standard JS

Pull Request - State: closed - Opened by tarrow over 7 years ago - 2 comments

#160 - Stop using the log global by upgrading winston

Pull Request - State: closed - Opened by tarrow over 7 years ago

#159 - Logger shouldn't be a global

Issue - State: closed - Opened by tarrow over 7 years ago

#158 - Resume (-r) does not work the same with arxiv, as with EUPMC API

Issue - State: open - Opened by sedimentation-fault over 7 years ago - 3 comments

#157 - HTTP error 429 - Too Many Requests

Issue - State: closed - Opened by sedimentation-fault over 7 years ago - 26 comments
Labels: help wanted, feature request

#156 - Handle HTTP errors during download gracefully

Issue - State: open - Opened by sedimentation-fault over 7 years ago - 4 comments

#155 - Potentially unhandled rejection - Error: read ECONNRESET

Issue - State: open - Opened by sedimentation-fault over 7 years ago - 3 comments

#154 - small addition to README

Pull Request - State: open - Opened by Daniel-Mietchen over 7 years ago - 1 comment

#153 - EuPMC API Broken - reported doesn't match actual results

Issue - State: closed - Opened by tarrow over 7 years ago - 3 comments

#150 - use version_compare not semver

Pull Request - State: closed - Opened by tarrow almost 8 years ago

#149 - Potentially unhandled rejection [1] TypeError: Invalid Version: 4.5.3.1

Issue - State: closed - Opened by rossmounce almost 8 years ago - 3 comments

#148 - Download list of identifiers

Issue - State: open - Opened by tarrow almost 8 years ago - 2 comments
Labels: enhancement

#147 - Query based on PMIDS

Issue - State: closed - Opened by alexmaina almost 8 years ago - 8 comments

#146 - Failure to install on Windows 8.1

Issue - State: closed - Opened by rossmounce almost 8 years ago - 2 comments

#145 - Corrupted / blank page PDF downloads

Issue - State: open - Opened by rossmounce almost 8 years ago - 5 comments

#143 - Malformed EUPMC query doesn't terminate, nor give error message

Issue - State: open - Opened by rossmounce almost 8 years ago - 5 comments

#142 - non-JSON formatted simpler summary data desired

Issue - State: open - Opened by rossmounce almost 8 years ago - 2 comments
Labels: feature request

#141 - Installation needs extra guidance for Ubuntu users

Issue - State: closed - Opened by rossmounce almost 8 years ago - 3 comments

#140 - getpapers has many fewer hits than EUPMC interface

Issue - State: open - Opened by petermr almost 8 years ago - 7 comments

#139 - Warnings, error and nothing gets saved

Issue - State: open - Opened by solstag about 8 years ago - 7 comments

#138 - Include default limit

Issue - State: open - Opened by tarrow about 8 years ago
Labels: enhancement

#137 - warn log if had to retry more than once

Pull Request - State: closed - Opened by tarrow about 8 years ago

#136 - warn if api version changes

Pull Request - State: closed - Opened by tarrow about 8 years ago

#135 - Show number of Retries

Issue - State: closed - Opened by tarrow about 8 years ago

#134 - Fix process ending early

Pull Request - State: closed - Opened by tarrow about 8 years ago

#133 - use nextCursorMark rather than increment page for paging

Pull Request - State: closed - Opened by tarrow about 8 years ago

#132 - Missing XML files

Issue - State: closed - Opened by tarrow about 8 years ago - 1 comment

#131 - Fix PDFs and XML files not being downloaded at the same time

Issue - State: closed - Opened by tarrow about 8 years ago - 1 comment

#130 - test EuPMC api version and notify user if it is old

Issue - State: closed - Opened by tarrow about 8 years ago

#129 - page using cursorMark for EuPMC

Issue - State: closed - Opened by tarrow about 8 years ago - 1 comment

#128 - Update to EuropePMC api v4.5.3

Issue - State: closed - Opened by tarrow about 8 years ago

#127 - Look into RobotReviewer

Issue - State: open - Opened by Daniel-Mietchen about 8 years ago

#126 - Integrate paper metadata handling with Wikidata

Issue - State: open - Opened by Daniel-Mietchen about 8 years ago - 3 comments

#125 - contentmine installation

Issue - State: closed - Opened by alexmaina about 8 years ago - 2 comments

#124 - Crash for parsing JSON in large CrossRef query (116,808)

Issue - State: open - Opened by chartgerink about 8 years ago - 6 comments
Labels: Backlog

#123 - Retry if malformed response

Pull Request - State: closed - Opened by tarrow about 8 years ago

#122 - fix limit in eupmc

Pull Request - State: closed - Opened by tarrow about 8 years ago

#121 - -k not working for EPMC query

Issue - State: closed - Opened by petermr about 8 years ago - 1 comment

#120 - Include alternative crossref api routes?

Issue - State: closed - Opened by chartgerink about 8 years ago - 2 comments

#119 - Write metadata on failure and allow restarting of failed downloads

Pull Request - State: closed - Opened by tarrow about 8 years ago
Labels: RTR

#118 - Use requests rather than restler

Pull Request - State: closed - Opened by tarrow about 8 years ago
Labels: RTR

#117 - Timeouts and other errors while getting metadata in a large query to EPMC

Issue - State: open - Opened by solstag about 8 years ago - 2 comments

#116 - SciHub.cc getter/scraper for ContentMine?

Issue - State: closed - Opened by brainstorm over 8 years ago - 1 comment

#115 - Fix CrossRef bugs and enable filtering

Pull Request - State: closed - Opened by tarrow over 8 years ago - 1 comment
Labels: RTR

#114 - EuPMC should differentiate no results and bad query

Issue - State: open - Opened by tarrow over 8 years ago

#113 - Installing getpapers globally

Issue - State: closed - Opened by abannachbrown over 8 years ago - 11 comments

#112 - Improve CrossRef

Pull Request - State: closed - Opened by tarrow over 8 years ago - 5 comments
Labels: RTR

#111 - finish refactor of downloadURLs to downloadURLQueue

Pull Request - State: closed - Opened by tarrow over 8 years ago - 4 comments
Labels: RTR

#110 - Downloading XML files from EuropePMC is broken

Issue - State: closed - Opened by tarrow over 8 years ago - 1 comment

#109 - QS hangs indefintely

Issue - State: closed - Opened by petermr over 8 years ago - 3 comments

#108 - Name Too Long crash (ENAMETOOLONG)

Issue - State: open - Opened by petermr over 8 years ago - 3 comments

#107 - CrossRef api should allow filtering requests

Issue - State: open - Opened by tarrow over 8 years ago - 1 comment
Labels: enhancement

#106 - CrossRef api makes subdirectories

Issue - State: closed - Opened by tarrow over 8 years ago
Labels: bug

#105 - CrossRef api doesn't obey -n

Issue - State: closed - Opened by tarrow over 8 years ago - 2 comments
Labels: bug

#104 - Cannot read property 'semanticType' of undefined

Issue - State: open - Opened by petermr over 8 years ago - 1 comment

#103 - --minedterms always retrieves 200 hits

Issue - State: open - Opened by petermr over 8 years ago

#102 - Limit number of papers retrieved

Issue - State: closed - Opened by psychemedia over 8 years ago - 3 comments

#101 - Installing getpapers on Ubuntu distros

Issue - State: closed - Opened by alexmaina over 8 years ago - 5 comments

#99 - Error: ENOENT: no such file or directory, open '*/eupmc_result.json'

Issue - State: closed - Opened by Daniel-Mietchen over 8 years ago - 3 comments

#97 - split `eumpc_results.json` into `metadata/source/metadata.json` for each `CTree`

Issue - State: closed - Opened by petermr over 8 years ago - 1 comment

#95 - EuPMC returns a different number of results by API than by UI

Issue - State: open - Opened by tarrow over 8 years ago - 6 comments

#92 - Logger doesn't handle no output directory.

Issue - State: closed - Opened by tarrow over 8 years ago - 2 comments

#89 - A bad query to EPMC is not handled well.

Issue - State: open - Opened by tarrow over 8 years ago - 6 comments

#88 - provide instructions on how to download getpapers

Issue - State: closed - Opened by teatree1212 over 8 years ago - 2 comments

#57 - Problem with fulltext html urls file - mostly empty

Issue - State: closed - Opened by markmacgillivray about 9 years ago - 2 comments