GitHub / ComputationalCryoEM/ASPIRE-Python issues and pull requests
#1125 - Whitening Filter Threshold
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 13 comments
Labels: cleanup
#1124 - Hack24 sparse
Pull Request -
State: open - Opened by garrettwrong over 1 year ago
Labels: enhancement, cleanup, Optimization, GPU
#1124 - Hack24 sparse
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: enhancement, cleanup, Optimization, GPU
#1123 - Hack24 nufft updates
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: Optimization, GPU
#1123 - Hack24 nufft updates
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: Optimization, GPU
#1122 - update GHA miniconda setup version to ~v3~ v2.3.0
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 3 comments
Labels: cleanup, extern, dependencies
#1122 - update GHA miniconda setup version to ~v3~ v2.3.0
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 3 comments
Labels: cleanup, extern, dependencies
#1121 - Update GH Actions miniconda setup
Issue -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, extern, dependencies
#1120 - sklearn API change
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: bug, CI, extern
#1120 - sklearn API change
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: bug, CI, extern
#1119 - `sklearn` release breaking API
Issue -
State: open - Opened by j-c-c over 1 year ago
Labels: bug, CI, extern
#1118 - Relion now uses `rlnOriginX(Y)Angstrom` instead of `rlnOriginX(Y)`
Issue -
State: open - Opened by j-c-c over 1 year ago
Labels: bug, extern
#1117 - J-sync Bug
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: bug
#1116 - D2 Common-lines Algorithm
Pull Request -
State: open - Opened by j-c-c over 1 year ago
- 3 comments
Labels: enhancement
#1116 - D2 Common-lines Algorithm
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 4 comments
Labels: enhancement
#1115 - Error when run aspire.cov3d with cupy
Issue -
State: closed - Opened by ThinkJanice over 1 year ago
- 7 comments
Labels: support
#1114 - CUDA/CUPY kernel for building Common Line matrix
Issue -
State: closed - Opened by garrettwrong over 1 year ago
- 3 comments
Labels: enhancement, Optimization, GPU
#1113 - CI update
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug, CI
#1113 - CI update
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug, CI
#1112 - Ampere CI Fix
Pull Request -
State: open - Opened by j-c-c over 1 year ago
Labels: bug, CI
#1112 - Ampere CI Fix
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: bug, CI
#1111 - Non repeatable behavior of Image.backproject
Issue -
State: closed - Opened by remy-aber over 1 year ago
- 5 comments
Labels: extern, support
#1110 - Projection/Backprojection Adjointedness
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 7 comments
Labels: bug, help wanted, support
#1110 - Projection/Backprojection Adjointedness
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 7 comments
Labels: bug, help wanted, support
#1109 - Volume.project and Image.backproject are not adjoint operators
Issue -
State: closed - Opened by remy-abergel over 1 year ago
- 3 comments
Labels: bug, cleanup, support
#1108 - Sync3n Initial Add
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 11 comments
Labels: enhancement, Optimization, GPU
#1108 - Sync3n Initial Add
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 11 comments
Labels: enhancement, Optimization, GPU
#1107 - Missing CL Features
Issue -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: bug, enhancement, cleanup
#1106 - SymmetryGroup Parsing
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: cleanup
#1106 - SymmetryGroup Parsing
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: cleanup
#1105 - Adding progress bar for CLSync
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: enhancement, good first issue, cleanup
#1105 - Adding progress bar for CLSync
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: enhancement, good first issue, cleanup
#1104 - FFT swap
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, extern, dependencies
#1104 - FFT swap
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, extern, dependencies
#1103 - Circular Imports
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: bug, cleanup
#1103 - Circular Imports
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: bug, cleanup
#1102 - MeanEstimator circular dependency
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1101 - OrientedSource Lazy Evaluation
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: cleanup
#1101 - OrientedSource Lazy Evaluation
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
Labels: cleanup
#1100 - Use _cached_im when available in IndexedSource
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, cleanup
#1100 - Use _cached_im when available in IndexedSource
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, cleanup
#1098 - Caching IndexedSource
Issue -
State: closed - Opened by garrettwrong over 1 year ago
Labels: bug, documentation, cleanup
#1097 - Backprojection Example
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: documentation, enhancement
#1096 - Add `RampFilter`
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: documentation, enhancement, good first issue
#1095 - Add `Sinogram` class
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: enhancement
#1094 - Doc updates 24q1 2
Pull Request -
State: open - Opened by garrettwrong over 1 year ago
Labels: documentation, cleanup
#1094 - Doc updates 24q1 2
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: documentation, cleanup
#1093 - Update GitHub actions versions
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: CI
#1093 - Update GitHub actions versions
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: CI
#1092 - Update ray
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
#1092 - Update ray
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
#1091 - Update Github actions `checkout` and `setup-python` versions
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: CI
#1090 - `develop` to `main` v0.12.2
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: documentation, CI, extern, dependencies
#1090 - `develop` to `main` v0.12.2
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: documentation, CI, extern, dependencies
#1089 - Gemmi Update
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 3 comments
Labels: bug, CI, extern
#1089 - Gemmi Update
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 3 comments
Labels: bug, CI, extern
#1088 - Gemmi Release Bug
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug, CI, extern, dependencies
#1087 - cufinufft v2.2.0 migration
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: CI, extern, dependencies, GPU
#1087 - cufinufft v2.2.0 migration
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: CI, extern, dependencies, GPU
#1086 - update cufinufft
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: enhancement, CI, cleanup, extern, dependencies
#1086 - update cufinufft
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: enhancement, CI, cleanup, extern, dependencies
#1085 - Default Estimator 3D basis
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: cleanup
#1085 - Default Estimator 3D basis
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: cleanup
#1084 - SymmetryGroup Pass-through for Volume Transformations
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 2 comments
Labels: bug
#1084 - SymmetryGroup Pass-through for Volume Transformations
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 2 comments
Labels: bug
#1083 - SymmetryGroup Parser
Issue -
State: closed - Opened by j-c-c almost 2 years ago
- 1 comment
Labels: cleanup
#1082 - Doc updates 24q1
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: documentation, cleanup
#1082 - Doc updates 24q1
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: documentation, cleanup
#1081 - Volume transformation removes `symmetry_group`
Issue -
State: closed - Opened by j-c-c almost 2 years ago
- 1 comment
Labels: bug
#1080 - Minor doc/tutorial additions.
Issue -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: documentation, enhancement, good first issue, cleanup
#1079 - Allow RelionSource to be double precision
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 4 comments
Labels: bug, enhancement
#1079 - Allow RelionSource to be double precision
Pull Request -
State: open - Opened by garrettwrong almost 2 years ago
Labels: bug, enhancement
#1078 - Retry finwin pkg
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: bug, cleanup, extern, dependencies
#1078 - Retry finwin pkg
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: bug, cleanup, extern, dependencies
#1077 - Black updates
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: cleanup, extern, dependencies
#1077 - Black updates
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: cleanup, extern, dependencies
#1076 - Bug fix for `evaluate_src_filters_on_grid`
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 1 comment
Labels: bug
#1076 - Bug fix for `evaluate_src_filters_on_grid`
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 1 comment
Labels: bug
#1075 - IdentityFilter for Simulation
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 2 comments
Labels: bug
#1075 - IdentityFilter for Simulation
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 2 comments
Labels: bug
#1074 - CUDA 12 Support
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: enhancement, CI, extern, dependencies
#1073 - `finufft` 2.2.0 updates
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: extern, dependencies
#1073 - `finufft` 2.2.0 updates
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: extern, dependencies
#1072 - Symmetry Boosting
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 3 comments
Labels: enhancement
#1072 - Symmetry Boosting
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 3 comments
Labels: enhancement
#1071 - Incremental Mean Volume Checkpoint
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: enhancement
#1071 - Incremental Mean Volume Checkpoint
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: enhancement
#1070 - Add Mean Estimator checkpointing
Issue -
State: closed - Opened by garrettwrong almost 2 years ago
Labels: enhancement, cleanup
#1068 - `develop` ~~> `main` v0.12.1
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 3 comments
Labels: documentation, CI
#1067 - Fix incorrect basis in Coef wrapper
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: bug, cleanup
#1065 - Workaround Ray dependency conflict
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: bug, extern, dependencies
#1064 - Importlib unhack
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 5 comments
Labels: bug, Optimization
#1063 - Blk Diag dtypes
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: bug, cleanup
#1062 - Bump version to 0.12.1
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 1 comment
Labels: documentation
#1061 - Cutoff none
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: enhancement, good first issue, cleanup
#1060 - FRC and FSC `cutoff=None` option
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: enhancement, cleanup
#1058 - Simulation `eval_coords` Bug
Pull Request -
State: closed - Opened by j-c-c almost 2 years ago
- 3 comments
Labels: bug
#1057 - Shared Basis Rotate test
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 2 comments
Labels: CI, cleanup
#1056 - Long Running Class avg test patches
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: CI, cleanup
#1055 - Fix CI, update filter._evaluate arg order.
Pull Request -
State: closed - Opened by garrettwrong almost 2 years ago
- 1 comment
Labels: CI, cleanup