GitHub / ComputationalCryoEM/ASPIRE-Python issues and pull requests
#1198 - Redundant CL and rotation calculations
Issue -
State: closed - Opened by garrettwrong about 1 year ago
- 1 comment
Labels: bug, cleanup, Optimization
#1197 - Problem with Cov3D
Issue -
State: closed - Opened by ThinkJanice about 1 year ago
- 4 comments
Labels: support
#1196 - `ImageSource.downsample` moves particles
Issue -
State: open - Opened by j-c-c about 1 year ago
#1195 - PowerFilter/whiten safeguard default value
Pull Request -
State: closed - Opened by j-c-c about 1 year ago
- 1 comment
Labels: bug
#1194 - Support Numpy 1 and Numpy 2
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 3 comments
Labels: enhancement, CI, extern, dependencies
#1193 - Add Python 3.12, drop 3.8
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 4 comments
Labels: documentation, enhancement, good first issue, CI, dependencies
#1191 - Smarter Overwrite
Pull Request -
State: closed - Opened by j-c-c about 1 year ago
- 5 comments
Labels: cleanup
#1190 - Restore Sync3N `S_weighting` unit test
Issue -
State: closed - Opened by garrettwrong about 1 year ago
- 1 comment
Labels: good first issue, CI, cleanup
#1189 - minimal changes to restore simulation gallery for release
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 1 comment
Labels: bug, documentation, cleanup
#1188 - Develop ~~> Main v0.13.0
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 3 comments
#1187 - update code cov to token auth
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: CI, extern
#1186 - Arm updates
Issue -
State: closed - Opened by j-c-c about 1 year ago
- 1 comment
Labels: CI, cleanup
#1185 - S weighting patch
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: bug, enhancement, cleanup, theory
#1184 - Reconstruction with know angles and substraction of images from a volume
Issue -
State: closed - Opened by Grigori200 about 1 year ago
- 2 comments
Labels: documentation, support
#1182 - Bump version: 0.12.3 → 0.13.0
Pull Request -
State: open - Opened by garrettwrong about 1 year ago
Labels: documentation, CI
#1181 - initial add DiracBasis2D and simple tests
Pull Request -
State: open - Opened by garrettwrong about 1 year ago
Labels: enhancement
#1180 - Estimate Shifts
Pull Request -
State: closed - Opened by j-c-c about 1 year ago
Labels: bug, cleanup
#1179 - Scores bound bug
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 1 comment
Labels: bug
#1178 - Dirac Basis
Issue -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: enhancement, cleanup
#1177 - D2 follow up tasks
Issue -
State: open - Opened by j-c-c about 1 year ago
Labels: cleanup
#1176 - `estimate-shifts` appear to have X-Y flipped
Issue -
State: open - Opened by garrettwrong about 1 year ago
Labels: bug, cleanup
#1175 - Commonline `J_sync` method unification
Issue -
State: open - Opened by j-c-c about 1 year ago
Labels: cleanup
#1174 - osx_arm updates
Pull Request -
State: open - Opened by garrettwrong about 1 year ago
Labels: documentation, enhancement, CI, cleanup, extern, dependencies
#1173 - Rmsh
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: cleanup, dependencies
#1172 - Angs
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 8 comments
Labels: bug, cleanup
#1171 - Cl mask patch
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: bug, cleanup
#1171 - Cl mask patch
Pull Request -
State: closed - Opened by garrettwrong about 1 year ago
- 2 comments
Labels: bug, cleanup
#1170 - Remove Warnings
Pull Request -
State: closed - Opened by j-c-c about 1 year ago
- 4 comments
Labels: CI, cleanup
#1170 - Remove Warnings
Pull Request -
State: open - Opened by j-c-c about 1 year ago
Labels: CI, cleanup
#1169 - Remove `pyshtools` dependency
Issue -
State: closed - Opened by garrettwrong about 1 year ago
Labels: enhancement, cleanup, dependencies
#1168 - finufft/cufinufft 2.3.0rc1
Pull Request -
State: open - Opened by garrettwrong about 1 year ago
- 20 comments
Labels: extern
#1168 - finufft/cufinufft 2.3.0rc1
Pull Request -
State: open - Opened by garrettwrong about 1 year ago
Labels: extern
#1167 - WIP: CUDA build common lines
Pull Request -
State: open - Opened by garrettwrong over 1 year ago
Labels: enhancement, Optimization, GPU
#1167 - WIP: CUDA build common lines
Pull Request -
State: open - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: enhancement, Optimization, GPU
#1166 - Fix Fuzzy Mask for small L
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, cleanup
#1166 - Fix Fuzzy Mask for small L
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, cleanup
#1165 - Update wemd.py
Pull Request -
State: closed - Opened by mosco over 1 year ago
- 1 comment
Labels: enhancement
#1165 - Update wemd.py
Pull Request -
State: closed - Opened by mosco over 1 year ago
- 1 comment
Labels: enhancement
#1164 - New Line Class with Back Project Method
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
- 1 comment
#1164 - New Line Class with Back Project Method
Pull Request -
State: open - Opened by certifiedp over 1 year ago
#1163 - New Line Class with Back Project Method
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
#1163 - New Line Class with Back Project Method
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
#1162 - Downsample Bug
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1162 - Downsample Bug
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1161 - Long running workflow patches
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: bug, CI, cleanup, Optimization, GPU
#1161 - Long running workflow patches
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: bug, CI, cleanup, Optimization, GPU
#1160 - Long Running Workflow patches
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, good first issue, cleanup, GPU
#1160 - Long Running Workflow patches
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, good first issue, cleanup, GPU
#1159 - Revisit CuPy FFT single precision upcasting
Issue -
State: open - Opened by garrettwrong over 1 year ago
#1158 - Cleanup FFB precomp and preload freq grids to GPU
Issue -
State: open - Opened by garrettwrong over 1 year ago
#1157 - Pixel Size Attributes
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 4 comments
Labels: enhancement, good first issue
#1157 - Pixel Size Attributes
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 4 comments
Labels: enhancement, good first issue
#1156 - Image Downsample Scaling Bug
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1155 - Volume Downsample Unexpected Behavior
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 4 comments
Labels: bug
#1154 - Image Offsets Swap
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1153 - Batched covar test run to run var
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, cleanup
#1153 - Batched covar test run to run var
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, cleanup
#1152 - Volume pixel size
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: enhancement
#1151 - ClassAvgSource SymmetryGroup Pass-through
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: bug, cleanup
#1151 - ClassAvgSource SymmetryGroup Pass-through
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 2 comments
Labels: bug, cleanup
#1150 - Class Image line projection method
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
- 3 comments
Labels: enhancement
#1150 - Class Image line projection method
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
- 3 comments
Labels: enhancement
#1149 - More 10081 fixes
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 3 comments
Labels: bug, documentation, cleanup
#1149 - More 10081 fixes
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 3 comments
Labels: bug, documentation, cleanup
#1148 - Check FFB3D Zeros
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: documentation, cleanup, support
#1146 - Relion/ASPIRE projection image offsets
Issue -
State: closed - Opened by j-c-c over 1 year ago
- 1 comment
Labels: bug
#1145 - 10081 Gallery Experiment Patch
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: bug, documentation
#1145 - 10081 Gallery Experiment Patch
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: bug, documentation
#1144 - Remove `sklearn._fit_*` workaround
Issue -
State: open - Opened by j-c-c over 1 year ago
Labels: good first issue, cleanup
#1143 - Remove `numeric.scipy.cg` workaround
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: good first issue, cleanup
#1142 - Scipy `cg` workaround
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: good first issue, extern, dependencies
#1142 - Scipy `cg` workaround
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: good first issue, extern, dependencies
#1141 - Develop ~~> Main v0.12.3
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 5 comments
#1141 - Develop ~~> Main v0.12.3
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 5 comments
#1140 - Hack24
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: bug, enhancement, CI, cleanup, Optimization, GPU
#1140 - Hack24
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: bug, enhancement, CI, cleanup, Optimization, GPU
#1139 - Bumping version
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: documentation, CI
#1139 - Bumping version
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
Labels: documentation, CI
#1138 - 2024 GPU Hackathon Integration
Issue -
State: closed - Opened by garrettwrong over 1 year ago
- 6 comments
Labels: enhancement, CI, cleanup, Optimization, GPU
#1137 - bump stable osx runner image from 11->13
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: good first issue, CI, cleanup, extern, dependencies
#1137 - bump stable osx runner image from 11->13
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: good first issue, CI, cleanup, extern, dependencies
#1136 - GHA Mac os 11 removed
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: good first issue, CI, cleanup, extern, dependencies
#1135 - Cleanup Warnings
Issue -
State: closed - Opened by garrettwrong over 1 year ago
- 2 comments
Labels: CI, cleanup
#1134 - support np1 and np2 ComplexWarning
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, extern, dependencies
#1134 - support np1 and np2 ComplexWarning
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
- 1 comment
Labels: CI, extern, dependencies
#1133 - Numpy 2 release
Issue -
State: open - Opened by garrettwrong over 1 year ago
Labels: bug, good first issue, CI, extern, dependencies
#1132 - adjust tolerance for m1
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
- 2 comments
Labels: good first issue, CI
#1132 - adjust tolerance for m1
Pull Request -
State: closed - Opened by certifiedp over 1 year ago
- 2 comments
Labels: good first issue, CI
#1131 - Testing fast implementations of A* A where A is the projection operator
Issue -
State: open - Opened by 09pouchol over 1 year ago
Labels: support
#1130 - All the fills
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1130 - All the fills
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1129 - Hack24 ffb3d
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
#1129 - Hack24 ffb3d
Pull Request -
State: closed - Opened by garrettwrong over 1 year ago
#1128 - Move arrays to build
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1128 - Move arrays to build
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1127 - FFB2D fix anufft warning
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1127 - FFB2D fix anufft warning
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1126 - ffb_2d gpu
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1126 - ffb_2d gpu
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
#1125 - Whitening Filter Threshold
Pull Request -
State: closed - Opened by j-c-c over 1 year ago
- 13 comments
Labels: cleanup