Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Computational-Morphogenomics-Group/MarkerMap issues and pull requests

#57 - allow returning saved models, fix quick_starts

Pull Request - State: closed - Opened by WilsonGregory about 1 month ago

#56 - Slurm runtime error due to deprecated slurm syntax

Issue - State: open - Opened by linderss about 1 month ago - 1 comment

#55 - Gregory sparse array

Pull Request - State: closed - Opened by WilsonGregory 6 months ago

#53 - Document that we need dense arrays

Issue - State: closed - Opened by WilsonGregory 8 months ago - 1 comment

#52 - update quick start scripts and notebooks, readme

Pull Request - State: closed - Opened by WilsonGregory 8 months ago

#50 - updates

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#49 - bug fixes

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#48 - fix mouse brain counts

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#47 - Gregory persist2

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#46 - make benchmark work for reconstruction as well

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#45 - add zeisel and mouse_brain lots of cell types

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#44 - add benchmark models for various differential expression methods

Pull Request - State: closed - Opened by WilsonGregory about 1 year ago

#43 - update readme installation instructions to use pip, add a section abo…

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#42 - fix demo simple interface, issues with imports, bump to 1.0.2

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#41 - force smashpy to be 0.1.2, there is an issue with older one

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#40 - Gregory package

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#39 - move RankCorr folder, update setup.cfg, bump version to 1

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#38 - Major refactor

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 2 comments

#36 - allow the mislabel experiment to only have the mislabelling on markers

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#35 - Gregory fix eval recon

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#34 - Gregory umap

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#33 - L2 Not Good for scVI vs MarkerMap

Issue - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment
Labels: bug

#32 - Evaluate Reconstruction

Issue - State: open - Opened by WilsonGregory over 2 years ago

#31 - Gregory evaluate recon

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#30 - move data load functions to utils

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#28 - allow passing in args when you submit the script

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#27 - add RankCorr, update notebooks to use RankCorrWrapper for easier importing

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#26 - add the ability to specify the decoders

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 6 comments

#25 - add benchmark quick start, update readme and add table of contents

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 2 comments

#24 - fix name

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#23 - Quick Start Script and Readme

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#22 - save f1 benchmark as well, allow plotting of f1 in plot benchmarks

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#21 - Package MarkerMap for local installation

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 2 comments

#20 - disable checkpointing in train_model

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#19 - add mouse brain preprocessing to benchmark script

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#18 - Project Lacks a License

Issue - State: closed - Opened by beelze-b over 2 years ago - 4 comments

#17 - benchmark noise

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 1 comment

#16 - use smashpy wrapper instead of smashpy

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#15 - add functions to select between different data sets

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#14 - benchmark save

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#13 - benchmark smashpy, L1_VAE

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 3 comments

#12 - Benchmark Wrappers

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 8 comments

#11 - benchmarking framework

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago - 3 comments

#10 - clean remainder of notebooks

Pull Request - State: closed - Opened by WilsonGregory over 2 years ago

#9 - Optimize sample_subset with Pytorch JIT

Issue - State: open - Opened by WilsonGregory almost 3 years ago
Labels: enhancement

#8 - Pre-commit Hook

Issue - State: open - Opened by WilsonGregory almost 3 years ago
Labels: bug

#7 - Add Test Framework

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago - 2 comments

#6 - Mouse notebook, comments

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago - 3 comments

#5 - clear mouse notebook

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago

#4 - Precommit notebook clean

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago - 1 comment

#3 - remove other empty notebooks

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago

#2 - add some setup instructions for MacOS

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago

#1 - remove Paul_empty since its a copy of Paul

Pull Request - State: closed - Opened by WilsonGregory almost 3 years ago - 4 comments