Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CompEvol/BeastFX issues and pull requests

#81 - LogAnalyser can fail when log files is being written to

Issue - State: closed - Opened by rbouckaert 10 months ago

#80 - LogAnalyser multithreading

Issue - State: closed - Opened by rbouckaert 12 months ago

#79 - BEAUti windows alignment viewer shows black screen

Issue - State: open - Opened by rbouckaert 12 months ago

#78 - Importing alignments with .txt extension

Issue - State: closed - Opened by rbouckaert 12 months ago

#77 - AppLauncher patch

Pull Request - State: closed - Opened by tgvaughan about 1 year ago - 1 comment

#76 - AppLauncher app list detaches from top of window

Issue - State: closed - Opened by tgvaughan about 1 year ago

#75 - AppLauncher app icons very big

Issue - State: closed - Opened by tgvaughan about 1 year ago

#74 - Problems in LogCombiner 2.7.5.

Issue - State: closed - Opened by rbouckaert about 1 year ago - 1 comment

#73 - Package list table now resizes with window.

Pull Request - State: closed - Opened by tgvaughan about 1 year ago - 1 comment

#72 - Drag/Drop alignments do not always work

Issue - State: closed - Opened by rbouckaert over 1 year ago

#71 - Modularise TreeAnnotator

Issue - State: closed - Opened by rbouckaert over 1 year ago - 1 comment

#70 - Changing the colour of the validation label makes it invisible

Issue - State: closed - Opened by bjoelle over 1 year ago - 3 comments

#69 - AppLauncher CLI cannot find icons

Issue - State: closed - Opened by rbouckaert over 1 year ago

#68 - Nested input editor doesn't scroll

Issue - State: open - Opened by bjoelle over 1 year ago - 1 comment

#67 - Selected theme not indicated in menu

Issue - State: closed - Opened by rbouckaert over 1 year ago

#66 - Ambiguous data type dialogue box doesn't always get focus

Issue - State: closed - Opened by laduplessis over 1 year ago - 2 comments

#65 - HTML code in date parsing error message

Issue - State: closed - Opened by laduplessis over 1 year ago

#64 - Issue displaying alignment in BEAUti 2.7.4 on Windows

Issue - State: open - Opened by laduplessis over 1 year ago - 2 comments

#63 - Problems quitting BEAST 2.7.4 GUI on macOS

Issue - State: closed - Opened by laduplessis over 1 year ago - 1 comment

#62 - Prior preview x-axis rescaling buggy

Issue - State: closed - Opened by laduplessis over 1 year ago

#61 - Taxon set editor buttons don't display properly

Issue - State: closed - Opened by laduplessis over 1 year ago - 1 comment

#60 - BEAUti 2.7.4 package manager buttons don't display

Issue - State: closed - Opened by laduplessis over 1 year ago - 1 comment

#59 - Make FastaImporter allow more flexible data types

Issue - State: closed - Opened by rbouckaert over 1 year ago

#58 - Drag/drop alignment of partition panel in BEAUti

Issue - State: closed - Opened by rbouckaert over 1 year ago

#57 - Inconsistent labelling of partitions in priors panel

Issue - State: open - Opened by tgvaughan over 1 year ago - 1 comment

#56 - Linking paritions through comboboxes fails with STACEY template

Issue - State: closed - Opened by rbouckaert over 1 year ago
Labels: bug

#55 - FileListInputEditor should allow drag/drop of files

Issue - State: closed - Opened by rbouckaert over 1 year ago

#54 - LogCombiner GUI default file type

Issue - State: closed - Opened by rbouckaert over 1 year ago

#52 - Bug fix and improvements for BeautiTabPane and BeautiDoc argument parsers

Pull Request - State: closed - Opened by tgvaughan over 1 year ago - 1 comment

#51 - Fixed command line argument parsing problem.

Pull Request - State: closed - Opened by tgvaughan over 1 year ago - 2 comments

#50 - MRACPriorInputEditor not picking up the right taxon sets

Issue - State: open - Opened by rbouckaert over 1 year ago - 1 comment

#48 - Coalescent tree priors not showing options in BEAUti prior panel

Issue - State: closed - Opened by rbouckaert over 1 year ago - 1 comment

#47 - Link parameter GUI dialog problem

Issue - State: closed - Opened by walterxie over 1 year ago - 1 comment
Labels: bug

#46 - Guess date dialog

Issue - State: closed - Opened by walterxie over 1 year ago

#44 - Prior panel parametric distribution display

Issue - State: closed - Opened by rbouckaert over 1 year ago

#43 - BeagleTreeLikelihood ignores rootFrequencies input

Issue - State: closed - Opened by rbouckaert over 1 year ago

#42 - Generalise Node.getLength() implementation

Issue - State: closed - Opened by rbouckaert almost 2 years ago - 1 comment

#41 - LogCombiner GUI should pick up burn-in more robustly

Issue - State: open - Opened by rbouckaert almost 2 years ago

#40 - Enhance `-version_file` functionality

Issue - State: closed - Opened by rbouckaert almost 2 years ago

#39 - Robustify cloning after reloading XML

Issue - State: open - Opened by rbouckaert almost 2 years ago

#38 - Command line argument handling fix.

Pull Request - State: closed - Opened by tgvaughan almost 2 years ago

#37 - Allow "cancel" to stop beauti from closing.

Pull Request - State: closed - Opened by tgvaughan almost 2 years ago
Labels: bug

#36 - Junit tests

Issue - State: open - Opened by rbouckaert almost 2 years ago

#35 - BEAUti template polishing

Issue - State: open - Opened by rbouckaert almost 2 years ago

#34 - BEAUti cloning of clocks sometimes clones tree prior

Issue - State: open - Opened by rbouckaert almost 2 years ago - 3 comments

#33 - -version_file option for BEAUti and other apps

Issue - State: closed - Opened by rbouckaert almost 2 years ago

#32 - BeautiPanelConfig does not draw Gene Ploidy panel properly

Issue - State: open - Opened by walterxie about 2 years ago

#31 - allowMultipleSelection is not used in getLoadFile

Issue - State: open - Opened by walterxie about 2 years ago
Labels: bug

#30 - Package repositories dialog doesn't list full URLs

Issue - State: closed - Opened by tgvaughan about 2 years ago

#29 - TypeTraitSetInputEditor is useful

Issue - State: closed - Opened by walterxie about 2 years ago
Labels: enhancement

#28 - Dealing with input editor conflicts

Issue - State: open - Opened by jordandouglas about 2 years ago - 1 comment

#27 - Typos in Package Health Checker

Issue - State: closed - Opened by aezarebski about 2 years ago

#26 - Null exception to load other template

Issue - State: closed - Opened by walterxie about 2 years ago
Labels: bug

#25 - TaxonSetInputEditor: Species/Population cannot be edited

Issue - State: closed - Opened by jordandouglas about 2 years ago

#24 - BEAST & Applauncher output window too tall

Issue - State: open - Opened by rbouckaert about 2 years ago

#22 - Make TreeTraceAnalysis available as app

Issue - State: closed - Opened by rbouckaert about 2 years ago

#20 - Set working directory in BEAST GUI

Issue - State: closed - Opened by rbouckaert about 2 years ago

#19 - BEAST GUI output goes to wrong directory

Issue - State: closed - Opened by rbouckaert about 2 years ago - 1 comment

#18 - DocMaker not functioning

Issue - State: closed - Opened by rbouckaert about 2 years ago - 1 comment

#17 - Missing examples directory

Issue - State: closed - Opened by aezarebski about 2 years ago - 1 comment

#16 - Checkboxes do not trigger refresh of the GUI in BEAUti

Issue - State: closed - Opened by bjoelle about 2 years ago - 1 comment

#14 - AppLauncher -list "icon not found" messages

Issue - State: closed - Opened by rbouckaert about 2 years ago

#13 - Drag drop alignments into BEAUti

Issue - State: closed - Opened by rbouckaert about 2 years ago

#12 - Small graphical issues in BEAUti

Issue - State: closed - Opened by bjoelle about 2 years ago - 1 comment

#11 - Add option to specify version.xml files explicitly

Pull Request - State: closed - Opened by tgvaughan about 2 years ago - 1 comment

#10 - AquaFX theme for OS X does not work

Issue - State: closed - Opened by rbouckaert about 2 years ago

#9 - Licence? Readme with build instructions?

Issue - State: closed - Opened by tgvaughan about 2 years ago - 2 comments

#8 - More informative name?

Issue - State: closed - Opened by tgvaughan about 2 years ago - 4 comments

#7 - BEAUti splash screen not working

Issue - State: closed - Opened by rbouckaert about 2 years ago - 1 comment

#6 - Clean up code

Issue - State: open - Opened by rbouckaert about 2 years ago

#5 - beauti 'choose datatype' dialog does not format properly

Issue - State: closed - Opened by jordandouglas about 2 years ago

#4 - Convert LogCombiner to javafx

Issue - State: closed - Opened by rbouckaert about 2 years ago

#3 - Alert dialogs need to be styled

Issue - State: closed - Opened by rbouckaert about 2 years ago - 1 comment

#2 - Close button not working on modal dialogs

Issue - State: closed - Opened by rbouckaert over 2 years ago

#1 - Partitions panel (re)sizing

Issue - State: open - Opened by rbouckaert over 2 years ago - 4 comments