Ecosyste.ms: Issues

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GitHub / CompEpigen/methrix issues and pull requests

#32 - High memory usage with read_bedgraph

Issue - State: closed - Opened by jamespeapen 16 days ago - 2 comments

#31 - PCA plotting error

Issue - State: closed - Opened by questcof 8 months ago - 5 comments

#30 - Using get_region_summary with very large methrix object

Issue - State: closed - Opened by richardheery about 2 years ago - 2 comments

#29 - Update write_bedgraphs.R

Pull Request - State: closed - Opened by maurerv over 2 years ago - 1 comment

#27 - Error using HDF5 backend

Issue - State: closed - Opened by pangjli over 3 years ago - 4 comments

#25 - remove_snps() - Error in h(simpleError(msg, call))

Issue - State: closed - Opened by YoannPa about 4 years ago - 7 comments

#24 - Bioconductor devel version error

Issue - State: closed - Opened by PoisonAlien about 4 years ago - 1 comment

#23 - Track annotation is missing when bedGraphs are exported

Issue - State: closed - Opened by lutsik over 4 years ago - 3 comments

#22 - Show which CpGs are missing when loading bedGraphs

Issue - State: closed - Opened by lutsik over 4 years ago - 1 comment
Labels: enhancement

#21 - Super big

Pull Request - State: closed - Opened by rnbatra over 4 years ago - 5 comments

#20 - Update write_bedgraphs.Rd

Pull Request - State: closed - Opened by ClarissaFeuersteinAkgoz over 4 years ago - 2 comments

#19 - added the argument for SeqlevelsStyle and trackline in bedgraph

Pull Request - State: closed - Opened by ClarissaFeuersteinAkgoz over 4 years ago - 1 comment

#18 - added trackline in bedgraph and the argument for SeqlevelsStyle

Pull Request - State: closed - Opened by ClarissaFeuersteinAkgoz over 4 years ago - 2 comments

#16 - Display issue of plot legend titles in Methrix report

Issue - State: closed - Opened by YoannPa over 4 years ago

#15 - get_region_summary() and sample names with "_"

Issue - State: closed - Opened by ClarissaFeuersteinAkgoz over 4 years ago - 1 comment

#14 - plot_coverage; error in selection of random subset

Issue - State: closed - Opened by ClarissaFeuersteinAkgoz almost 5 years ago - 1 comment

#13 - Error in methrix report with subsetted methrix object

Issue - State: closed - Opened by ClarissaFeuersteinAkgoz almost 5 years ago - 1 comment

#12 - Wrong image in methrix_report: Chromosome-wise depth of coverage

Issue - State: closed - Opened by ClarissaFeuersteinAkgoz almost 5 years ago - 1 comment

#11 - bedGraph/bigWig export function would be of much use

Issue - State: closed - Opened by lutsik about 5 years ago - 2 comments

#10 - PC labels in the PCA plot are wrong

Issue - State: closed - Opened by lutsik about 5 years ago - 1 comment

#9 - Error while summarising regions

Issue - State: closed - Opened by lutsik about 5 years ago - 5 comments

#8 - Error while removing uncovered CpGs

Issue - State: closed - Opened by lutsik about 5 years ago - 1 comment

#7 - Error while masking CpGs based on coverage

Issue - State: closed - Opened by lutsik about 5 years ago - 1 comment

#6 - Typos in diagnostic messages when extracting CpGs

Issue - State: closed - Opened by lutsik over 5 years ago - 3 comments

#5 - Typo in the documentation

Issue - State: closed - Opened by ClarissaFeuerstein over 5 years ago - 1 comment

#4 - Missing x and y axis labels

Issue - State: closed - Opened by ClarissaFeuerstein over 5 years ago

#3 - Chromosome-wise plots have wrong ordering

Issue - State: closed - Opened by lutsik over 5 years ago - 1 comment

#2 - Suggestions for example dataset

Issue - State: closed - Opened by PoisonAlien over 5 years ago - 2 comments

#1 - Import of the bed files should be more generic

Issue - State: closed - Opened by lutsik almost 6 years ago - 3 comments