Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CogStack/MedCAT issues and pull requests

#323 - CU-346mpwz Improving memory usage of MedCAT models

Pull Request - State: closed - Opened by mart-r over 1 year ago - 1 comment

#323 - CU-346mpwz Improving memory usage of MedCAT models

Pull Request - State: closed - Opened by mart-r over 1 year ago - 1 comment

#322 - CU-863gntc58 Umlspt2ch

Pull Request - State: closed - Opened by mart-r over 1 year ago

#321 - Add option to add synthetic csv data in cat.supervise_train() and meta_cat.train()

Pull Request - State: closed - Opened by jenniferajiang over 1 year ago - 5 comments

#320 - Bump django from 3.2.18 to 3.2.19 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#319 - CU-862jr8wkk Pin pydantic dependency to avoid conflicts with v2.0 (#318)

Pull Request - State: closed - Opened by mart-r over 1 year ago

#318 - CU-862jr8wkk Pin pydantic dependency to avoid conflicts with v2.0

Pull Request - State: closed - Opened by mart-r over 1 year ago

#317 - CU-862jjprjw Fix github actions failures

Pull Request - State: closed - Opened by mart-r over 1 year ago

#316 - Added function to remove CUI from cdb

Pull Request - State: closed - Opened by antsh3k over 1 year ago - 6 comments

#315 - Add eval method to CAT

Pull Request - State: closed - Opened by jamesbrandreth over 1 year ago - 2 comments

#314 - Pin down transformers for the de-identification model

Pull Request - State: closed - Opened by baixiac almost 2 years ago - 2 comments

#313 - CU-8677ge6j8 Version identification and updating

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#312 - v1.7.0 Release PR

Pull Request - State: closed - Opened by tomolopolis almost 2 years ago

#311 - CU-862j7b9jc Mypy abc hotfix

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#310 - Bump django from 3.2.17 to 3.2.18 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#309 - Make transformer_ner continue processing other entities after the first non-matching

Pull Request - State: closed - Opened by baixiac almost 2 years ago - 4 comments

#308 - CU-862j7b9jc Mypy full release - 1.0.0

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#307 - Reduce the false positives on pushing to test pypi

Pull Request - State: closed - Opened by baixiac almost 2 years ago

#306 - CU-33g0f3w Read the docs build failures

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#305 - Read the docs build failures

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#304 - Read the docs build failures

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#303 - CU-33g0f3w Pin aiohttp dependency version for docs

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#302 - Bump django from 3.2.16 to 3.2.17 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#300 - Add options for loading meta models and additional NERs

Pull Request - State: closed - Opened by baixiac almost 2 years ago

#299 - CU-2e77a2k Cleanup utils

Pull Request - State: closed - Opened by mart-r almost 2 years ago - 8 comments

#298 - CU-86777ey74 No elastic dependency

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#297 - remove elasticsearch dependency

Issue - State: closed - Opened by FMelloMascarenhas-Cohere almost 2 years ago - 5 comments

#296 - Add confusion matrix to meta model evaluation

Pull Request - State: closed - Opened by jamesbrandreth almost 2 years ago

#295 - CU-862j0jcdu / CU-862j0jd2n Cdb json

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#294 - snomed refset processing update

Pull Request - State: closed - Opened by antsh3k almost 2 years ago - 1 comment

#293 - new install attempt with SNOMED model throws spacy/thinc config validation error

Issue - State: closed - Opened by ryleyb almost 2 years ago - 4 comments

#292 - Version 1.6.1 is not on pypi

Issue - State: closed - Opened by Zethson almost 2 years ago - 1 comment

#291 - v1.6 PR

Pull Request - State: closed - Opened by tomolopolis almost 2 years ago

#290 - How to use CUI filtering

Issue - State: open - Opened by sandertan almost 2 years ago

#289 - Loosen dependency restrictions

Pull Request - State: closed - Opened by Zethson almost 2 years ago - 2 comments

#288 - Loosen dependency constraints

Issue - State: closed - Opened by Zethson almost 2 years ago - 1 comment

#287 - CU-862hyd5wx Rosalind down

Pull Request - State: closed - Opened by mart-r almost 2 years ago - 2 comments

#286 - CU-39cmvru Faster hashing

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#285 - CU-38g55wn / CU-39cmv82 Support for python3.11 (and 3.10)

Pull Request - State: closed - Opened by mart-r almost 2 years ago - 2 comments

#284 - CU-346mpxm Improve load times

Pull Request - State: closed - Opened by mart-r almost 2 years ago

#283 - Match post release branches in the production workflow

Pull Request - State: closed - Opened by baixiac almost 2 years ago

#282 - CU-33g09h4 Unify docstrings

Pull Request - State: closed - Opened by mart-r about 2 years ago

#281 - 1.5 prod PR

Pull Request - State: closed - Opened by tomolopolis about 2 years ago

#280 - include joblib dep

Pull Request - State: closed - Opened by tomolopolis about 2 years ago - 1 comment

#279 - Update ReadMe.md to show Licence change

Pull Request - State: closed - Opened by antsh3k about 2 years ago

#278 - Bump django from 3.2.15 to 3.2.16 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#277 - Make stats reporting not have np.nan values on empty train count

Pull Request - State: closed - Opened by baixiac about 2 years ago - 1 comment

#276 - losen requirements

Pull Request - State: closed - Opened by charles-oplus about 2 years ago - 1 comment

#275 - Add URL of paper for Dutch model

Pull Request - State: closed - Opened by sandertan about 2 years ago

#274 - Print stats config linking filters

Pull Request - State: closed - Opened by mart-r about 2 years ago - 4 comments

#273 - CU-2vzhd93 Remove logging tutorials (move to MedCATtutorials)

Pull Request - State: closed - Opened by mart-r about 2 years ago

#272 - CU-2wgnqg5 Regression tests

Pull Request - State: closed - Opened by mart-r about 2 years ago - 1 comment

#271 - release v1.4 PR

Pull Request - State: closed - Opened by tomolopolis about 2 years ago

#270 - CU-2q50k3c: Add disclaimer, fix invalid html

Pull Request - State: closed - Opened by tomolopolis about 2 years ago

#269 - CU-23v5qgn Add UMLS preprocessing

Pull Request - State: closed - Opened by mart-r about 2 years ago

#268 - Fix issue with improper conflict merge in previous logging PR

Pull Request - State: closed - Opened by mart-r about 2 years ago

#267 - ontology type is wrong with the very latest model

Pull Request - State: closed - Opened by tomolopolis about 2 years ago - 1 comment

#266 - CU-2uhvm87 Pin multiprocess, aiohttp and smart-open versions in order…

Pull Request - State: closed - Opened by mart-r about 2 years ago - 1 comment

#265 - CU-2uhvm87 Pin multiprocess, aiohttp and smart-open versions in order…

Pull Request - State: closed - Opened by mart-r about 2 years ago

#264 - CU-2vzhd93 Logging improvements

Pull Request - State: closed - Opened by mart-r about 2 years ago - 2 comments

#263 - Fix issue with logging when setting an attribute fails within MixingConfig

Pull Request - State: closed - Opened by mart-r about 2 years ago

#261 - Snomed drug ext

Pull Request - State: closed - Opened by antsh3k about 2 years ago - 2 comments

#260 - Fixed issue due to data type validation when creating a model pack.

Pull Request - State: closed - Opened by mart-r about 2 years ago

#259 - Uk drug extension format has changed.

Pull Request - State: closed - Opened by antsh3k about 2 years ago

#258 - CU-1yfef9z Added initial and simplistic CONTRIBUTING.md

Pull Request - State: closed - Opened by mart-r about 2 years ago

#257 - CU-2tuwdjf Move to an identifier based config

Pull Request - State: closed - Opened by mart-r about 2 years ago - 1 comment

#256 - Upgrade spacy dependency

Issue - State: closed - Opened by louni-g about 2 years ago - 3 comments

#255 - Dict readability fixes

Pull Request - State: closed - Opened by mart-r over 2 years ago - 1 comment

#254 - Bump django from 3.2.14 to 3.2.15 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#253 - Warning: The CDB was exported by an unknown version of MedCAT.

Issue - State: closed - Opened by plandes over 2 years ago - 9 comments

#252 - Turning on spelling and abbreviations

Issue - State: closed - Opened by plandes over 2 years ago - 1 comment

#251 - Dependencies for 3.0 with scispacy

Issue - State: closed - Opened by plandes over 2 years ago - 4 comments

#250 - Bug fix during CogstackConn Authentication

Pull Request - State: closed - Opened by antsh3k over 2 years ago

#249 - Cogstack conn

Pull Request - State: closed - Opened by antsh3k over 2 years ago

#248 - Update model download section in documentation

Pull Request - State: closed - Opened by sandertan over 2 years ago

#247 - Print_stats fix

Pull Request - State: closed - Opened by antsh3k over 2 years ago

#246 - Remove Elasticsearch dependancy

Pull Request - State: closed - Opened by antsh3k over 2 years ago - 2 comments

#245 - Update model creator

Pull Request - State: closed - Opened by sandertan over 2 years ago - 1 comment

#244 - Bump django from 3.2.13 to 3.2.14 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#242 - removes all logging handlers

Pull Request - State: closed - Opened by zack-kimble over 2 years ago - 4 comments

#241 - Remove logging handlers from MedCAT

Issue - State: closed - Opened by zack-kimble over 2 years ago - 2 comments

#240 - Deid2

Pull Request - State: closed - Opened by w-is-h over 2 years ago

#239 - fix create_model_pack to work with ~ directory

Pull Request - State: closed - Opened by Imipenem over 2 years ago

#238 - Exact text value

Issue - State: closed - Opened by samjsramirez over 2 years ago - 1 comment

#236 - Minor log improvement for multi-processing.

Pull Request - State: closed - Opened by vladd-bit over 2 years ago - 2 comments

#235 - Complete UML model download

Issue - State: closed - Opened by analyticalpicasso over 2 years ago - 1 comment

#234 - Meta cat upgrade

Pull Request - State: closed - Opened by w-is-h over 2 years ago

#231 - More doc improvements

Pull Request - State: closed - Opened by tomolopolis over 2 years ago

#225 - Random unsupervised

Pull Request - State: closed - Opened by w-is-h over 2 years ago

#224 - Ckpt cleanup

Pull Request - State: closed - Opened by w-is-h over 2 years ago

#223 - Upgrade webapp pt2

Pull Request - State: closed - Opened by w-is-h over 2 years ago

#205 - Implemented a simple versioning system until the main one is done

Pull Request - State: closed - Opened by w-is-h almost 3 years ago

#187 - Deid

Pull Request - State: closed - Opened by w-is-h almost 3 years ago

#173 - Relation extraction

Pull Request - State: closed - Opened by vladd-bit about 3 years ago - 13 comments

#159 - Add contributor guidelines

Issue - State: closed - Opened by w-is-h about 3 years ago - 3 comments
Labels: enhancement

#158 - Add linting to the GH Actions workflow

Pull Request - State: closed - Opened by baixiac about 3 years ago - 1 comment