Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CogStack/MedCAT issues and pull requests

#506 - v1.14.0 release PR

Pull Request - State: closed - Opened by mart-r 8 days ago

#505 - Bump aiohttp from 3.10.5 to 3.10.11 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 8 days ago - 2 comments
Labels: dependencies

#504 - CU-8696nbm9j: Add module to convert vocab vectors

Pull Request - State: open - Opened by mart-r 13 days ago - 1 comment

#503 - CU-8696nbm03: Remove unigram table

Pull Request - State: open - Opened by mart-r 13 days ago - 1 comment

#502 - CU-8696n7w95: Remove commented code to fix DeID (oversight in PR 490)

Pull Request - State: closed - Opened by mart-r 13 days ago - 2 comments

#501 - RobertaTokenizerFast object has no attribute 'split_special_tokens'

Issue - State: closed - Opened by swburge 13 days ago - 6 comments

#500 - CU-8696m1mch: Remove versioning utility since all its parts were deprecated

Pull Request - State: closed - Opened by mart-r 15 days ago - 1 comment

#499 - medcat Model Pack/ Latest SNOMED_ver_2024

Issue - State: closed - Opened by Dhruv3sood about 1 month ago - 3 comments

#498 - CU-86967nnra Drop python 3.8 support (EoL)

Pull Request - State: closed - Opened by mart-r about 1 month ago - 2 comments

#497 - CU-869671bn4: Update requirements to fix workflow issue due to mypy

Pull Request - State: closed - Opened by mart-r about 1 month ago - 1 comment

#496 - CU-86964zm4d fix preprocessing

Pull Request - State: closed - Opened by mart-r about 2 months ago - 1 comment

#495 - MetaCAT fixes and upgrades

Pull Request - State: closed - Opened by shubham-s-agarwal about 2 months ago

#494 - CU-869637yfx: Pin spacy dependency to lower than 3.8

Pull Request - State: closed - Opened by mart-r about 2 months ago - 1 comment

#493 - Pydantic V2 Support

Issue - State: open - Opened by jenniferjiangkells 2 months ago - 1 comment

#492 - CU-8695vu71q: Make report identical run to run in identical cases

Pull Request - State: closed - Opened by mart-r 2 months ago - 1 comment

#491 - CU-8695uhe5n: Update docs dependency pins

Pull Request - State: closed - Opened by mart-r 2 months ago - 2 comments

#490 - CU-8695ucw9b deid transformers fix

Pull Request - State: closed - Opened by mart-r 2 months ago - 3 comments

#489 - CU-8695q21f6: Replace rosalind links with S3 ones in docs

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#488 - CU-8695pvhfe fix usage monitoring for multiprocessing

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#487 - Pushing bug fix for metacat

Pull Request - State: closed - Opened by shubham-s-agarwal 3 months ago - 1 comment

#486 - CU-8695knfbg Add name edits to regression suite

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#485 - CU-8695m5q4x: Fix issues detecting 1-token concepts

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#484 - CU-8695jwnjk: Fix description of an argument for --help to work in CLI

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#483 - Production/master sync

Pull Request - State: closed - Opened by mart-r 3 months ago

#482 - v1.13.0 release PR

Pull Request - State: closed - Opened by mart-r 3 months ago

#481 - CU-8695j1be2: Remove deprecated method on CDB

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#480 - CU-8695hydt9: Fix various typos

Pull Request - State: closed - Opened by mart-r 3 months ago - 1 comment

#479 - CU8695gyxrt CDB Merge Typo

Pull Request - State: closed - Opened by adam-sutton-1992 3 months ago
Labels: bug

#478 - CU-8695hghww backwards compatibility workflow

Pull Request - State: closed - Opened by mart-r 3 months ago - 4 comments

#476 - CU-8695d4www pydantic 2

Pull Request - State: open - Opened by mart-r 4 months ago - 2 comments

#475 - Bump aiohttp from 3.8.5 to 3.10.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#474 - Fixing bug for metacat

Pull Request - State: closed - Opened by shubham-s-agarwal 4 months ago - 3 comments

#473 - CU-8694fwyje: Update all configs with pre-load parts documented

Pull Request - State: closed - Opened by mart-r 4 months ago - 1 comment

#472 - Changes to documentation for metacat

Pull Request - State: closed - Opened by shubham-s-agarwal 4 months ago - 3 comments

#471 - CU-869588fdc: Bin blis to 1.0.0

Pull Request - State: closed - Opened by mart-r 4 months ago - 1 comment

#470 - CU-86956du3q revisit regression

Pull Request - State: closed - Opened by mart-r 4 months ago - 2 comments

#469 - CU-869574kvp update snomed preprocessing naming

Pull Request - State: closed - Opened by mart-r 4 months ago - 3 comments

#468 - Bump torch from 2.1.0 to 2.2.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 2 comments
Labels: dependencies

#467 - Hard coded SNOMED release file bug.

Issue - State: open - Opened by antsh3k 4 months ago - 4 comments

#466 - Deid logging update

Pull Request - State: closed - Opened by shubham-s-agarwal 4 months ago - 2 comments

#465 - CU-86956duhb: Add method to backport a model pack from 1.12 to previous version

Pull Request - State: closed - Opened by mart-r 4 months ago - 3 comments

#464 - ```cat.cdb.print_stats()``` returns empty

Issue - State: closed - Opened by LWserenic 4 months ago - 10 comments

#463 - CU-8694vv985 transitive deps

Pull Request - State: closed - Opened by mart-r 4 months ago - 2 comments

#462 - CU-8694cd9t2: Allow merging config into model pack config before init

Pull Request - State: closed - Opened by mart-r 4 months ago - 1 comment

#461 - CU-86951923u: Add option for simplified hash along with a few tests

Pull Request - State: closed - Opened by mart-r 5 months ago - 1 comment

#460 - Bump certifi from 2023.7.22 to 2024.7.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies

#459 - CU-8694vbw6y k-fold stats Standard Deviation

Pull Request - State: closed - Opened by mart-r 5 months ago - 1 comment

#458 - CU-8694wh3d5 track usage

Pull Request - State: closed - Opened by mart-r 5 months ago - 3 comments

#457 - Resync master with Production after 1.12 release

Pull Request - State: closed - Opened by mart-r 5 months ago

#456 - Split tests in production workflow to avoid Ouf Of Memory (137)

Pull Request - State: closed - Opened by mart-r 5 months ago

#455 - v1.12.0 release PR

Pull Request - State: closed - Opened by mart-r 5 months ago

#454 - CU-8694vte2g 1.12 depr removal

Pull Request - State: closed - Opened by mart-r 5 months ago - 3 comments

#453 - CU-8694vcvz7: Trust remote code when loading transfomers NER dataset

Pull Request - State: closed - Opened by mart-r 5 months ago - 2 comments

#452 - Bump scikit-learn from 1.3.1 to 1.5.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies

#451 - Bump urllib3 from 2.0.6 to 2.2.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 2 comments
Labels: dependencies

#450 - CU-8694u3yd2 cleanup name removal

Pull Request - State: closed - Opened by mart-r 6 months ago - 1 comment

#449 - CU-8694py1jr fix old config load with reg json

Pull Request - State: closed - Opened by mart-r 6 months ago - 2 comments

#448 - CU-8694pey4u: missing extra config if passed in

Pull Request - State: closed - Opened by tomolopolis 6 months ago - 1 comment

#447 - CU-8694fwyje pre load config(s)

Pull Request - State: closed - Opened by mart-r 6 months ago - 5 comments

#446 - CU-8694pey4u: extract cdb load to cls method

Pull Request - State: closed - Opened by tomolopolis 6 months ago - 1 comment

#445 - CU-8694p8y0k deprecation GHA check

Pull Request - State: closed - Opened by mart-r 6 months ago - 1 comment

#444 - CU-8694p8y0k deprecation gha check fork test

Pull Request - State: closed - Opened by mart-r 6 months ago - 2 comments

#443 - CU-8694n48uw better deprecation

Pull Request - State: closed - Opened by mart-r 6 months ago - 1 comment

#442 - Bump aiohttp from 3.8.5 to 3.9.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#441 - CU-8694mbn03: Remove the web app

Pull Request - State: closed - Opened by mart-r 6 months ago - 1 comment

#440 - Test/no ref/thai language support

Pull Request - State: closed - Opened by S2P2 6 months ago - 1 comment

#439 - Bump requests from 2.31.0 to 2.32.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: dependencies

#438 - CU-8693n892x environment/dependency snapshots

Pull Request - State: closed - Opened by mart-r 6 months ago - 4 comments

#437 - GHA/test fixes

Pull Request - State: closed - Opened by mart-r 6 months ago - 1 comment

#436 - Create snyk-security.yml

Pull Request - State: closed - Opened by mart-r 7 months ago - 1 comment

#435 - CU-8694gza88: Create snyk-security.yml

Pull Request - State: closed - Opened by mart-r 7 months ago - 2 comments

#434 - CU-8694gza88 Create codeql.yml

Pull Request - State: closed - Opened by mart-r 7 months ago - 2 comments

#433 - CU-8694hukwm: Document the materialising of generator when multiproce…

Pull Request - State: closed - Opened by mart-r 7 months ago - 2 comments

#432 - CU-8694gzbn3 k fold metrics

Pull Request - State: closed - Opened by mart-r 7 months ago - 12 comments

#431 - Merging changes from master to metacat_bert branch

Pull Request - State: closed - Opened by shubham-s-agarwal 7 months ago

#430 - Bump jinja2 from 3.1.2 to 3.1.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#429 - Bump tqdm from 4.66.1 to 4.66.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#427 - Resync production and master

Pull Request - State: closed - Opened by mart-r 7 months ago - 2 comments

#426 - v1.11.0 PR

Pull Request - State: closed - Opened by mart-r 7 months ago

#425 - CU-8694fk90t (almost) only primitive config

Pull Request - State: closed - Opened by mart-r 7 months ago - 1 comment

#424 - CU-8694fae3r: Avoid publishing PyPI release when doing GH pre-releases

Pull Request - State: closed - Opened by mart-r 7 months ago - 4 comments

#423 - CU-8694dpy1c: Return empty generator upon empty stream

Pull Request - State: closed - Opened by mart-r 7 months ago - 5 comments

#422 - CU-8694dpy1c: Restrict mypy to below 1.10.0

Pull Request - State: closed - Opened by mart-r 7 months ago - 2 comments

#421 - CU-8694cbcpu: Allow specifying an AU Snomed when preprocessing

Pull Request - State: closed - Opened by mart-r 7 months ago - 1 comment

#420 - Small addition to contribution guidelines

Pull Request - State: closed - Opened by mart-r 7 months ago

#419 - Adding Bert-style model for MetaCAT

Pull Request - State: closed - Opened by shubham-s-agarwal 7 months ago - 2 comments
Labels: enhancement

#418 - Bump aiohttp from 3.8.5 to 3.9.4 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#417 - CU-86948uv4g docstring signature consistency

Pull Request - State: closed - Opened by mart-r 7 months ago - 1 comment

#416 - CU-86949zjg9 mp progress

Pull Request - State: closed - Opened by mart-r 8 months ago - 1 comment

#414 - Bump idna from 3.4 to 3.7 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies

#413 - CU-86948uv4g docstring signature consistency

Pull Request - State: closed - Opened by mart-r 8 months ago - 1 comment

#412 - Bump transformers from 4.34.0 to 4.38.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies

#411 - CU-86947ja9y dill old weights

Pull Request - State: closed - Opened by mart-r 8 months ago - 1 comment

#410 - How to use SNOMED trained model

Issue - State: closed - Opened by aylee2008 8 months ago - 4 comments

#409 - Service unavailable

Issue - State: closed - Opened by AmgadHasan 8 months ago - 4 comments

#408 - Bump django from 3.2.24 to 3.2.25 in /webapp/webapp

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#407 - v1.10.2 PR

Pull Request - State: closed - Opened by mart-r 9 months ago