Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / CoBrALab/RABIES issues and pull requests

#402 - preprocess not working for tutorial dataset and version differences

Issue - State: open - Opened by mapepe18 13 days ago - 4 comments

#395 - Minimize operations after commonspace resampling

Issue - State: open - Opened by Gab-D-G 3 months ago

#390 - wrong preprocessing

Issue - State: closed - Opened by qiudashuai1 4 months ago

#389 - multiecho

Pull Request - State: open - Opened by davidgruskin 4 months ago - 4 comments

#388 - Resampling of 4D data with ANTs alone

Issue - State: open - Opened by Gab-D-G 4 months ago

#385 - Apply STC prior to de-oblique

Issue - State: open - Opened by Gab-D-G 5 months ago

#384 - Add CITATION.cff

Pull Request - State: closed - Opened by Gab-D-G 5 months ago - 3 comments

#383 - --scan_list doesn't exist

Pull Request - State: closed - Opened by Gab-D-G 6 months ago

#382 - Cite publication

Pull Request - State: closed - Opened by Gab-D-G 6 months ago - 1 comment

#378 - No output in /analysis_datasink if --data_diagnosis tag is excluded

Issue - State: closed - Opened by david-roper 7 months ago - 2 comments

#376 - Failure to Inherit Unbiased Template

Issue - State: open - Opened by JS650 8 months ago

#375 - Phase encoding

Pull Request - State: open - Opened by Gab-D-G 8 months ago - 2 comments

#368 - Integrate Bruker to BIDS converter

Issue - State: open - Opened by Gab-D-G 9 months ago - 2 comments

#367 - number of shrink factors does nto match the number of levels

Issue - State: closed - Opened by jazlynntan 9 months ago - 5 comments

#365 - Weird registration issue during preprocessing

Issue - State: closed - Opened by geowk 11 months ago - 2 comments

#359 - the brain mask is smaller than the template

Issue - State: closed - Opened by lvqianmri 11 months ago - 2 comments

#356 - Error during preprocessing and InhoCorrection with RABIES

Issue - State: open - Opened by geowk 12 months ago - 9 comments

#353 - Add --bgimage to MELODIC reports

Issue - State: open - Opened by Gab-D-G about 1 year ago

#352 - Implement two-level modelbuild for longitudinal registration (--two_level)

Issue - State: open - Opened by Gab-D-G about 1 year ago - 1 comment

#351 - Bump scikit-learn from 0.24.1 to 1.0.1

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#349 - preprocessing Bus error

Issue - State: open - Opened by lshoheisel about 1 year ago - 2 comments

#347 - Bump jinja2 from 3.1.1 to 3.1.3 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#345 - For multi-parameter options, it is no longer needed to fill every par…

Pull Request - State: closed - Opened by Gab-D-G about 1 year ago

#344 - No b spline2

Pull Request - State: closed - Opened by Gab-D-G about 1 year ago

#342 - Documentation: Get users to check preprocessing QC images

Issue - State: open - Opened by gdevenyi about 1 year ago

#341 - Documentation: Get users to check input orientaitons

Issue - State: open - Opened by gdevenyi about 1 year ago - 1 comment

#340 - Indexing error during analysis (load_sub_input_dict)

Issue - State: open - Opened by essheh about 1 year ago - 10 comments

#339 - Make antsRegistration --fast optional

Issue - State: open - Opened by Gab-D-G about 1 year ago

#337 - Correct bug, robust inho cor wasn't working because of the new inheri…

Pull Request - State: closed - Opened by Gab-D-G about 1 year ago

#336 - correct spelling for --group_ica

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#335 - Issue when running ICA-AROMA

Issue - State: open - Opened by KarisColyerPatel over 1 year ago - 3 comments

#334 - Documentation

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#333 - Extension of QC to be better adapted to SBC/FC matrix

Issue - State: open - Opened by Gab-D-G over 1 year ago

#331 - Documentation

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#330 - Forgot to import numpy

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#328 - Check if oblique before applying --oblique2card

Issue - State: closed - Opened by Gab-D-G over 1 year ago

#327 - Correct oblique

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago - 3 comments

#326 - Improve testing

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#325 - Build and upload singularity image on release

Issue - State: open - Opened by gdevenyi over 1 year ago

#324 - Complete testing upon container build.

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#323 - Improve testing

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#322 - fix: Set FSL environment variables because conda install doesn't

Pull Request - State: closed - Opened by gdevenyi over 1 year ago

#320 - The spatial smoothing step creates data point outside the brain mask

Issue - State: closed - Opened by Gab-D-G over 1 year ago - 2 comments

#319 - New guidelines for developpers

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago - 2 comments

#318 - Docu updates

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#317 - Flexible pybids

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#316 - Id flagging

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#314 - The CLI --help is broken for confound correction

Issue - State: closed - Opened by Gab-D-G over 1 year ago

#313 - Add metadata to docker container

Issue - State: open - Opened by gdevenyi over 1 year ago

#312 - Bump numpy from 1.20.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#311 - Bump scipy from 1.8.1 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#310 - String parsing error for aCompCor in version 0.4.7

Issue - State: open - Opened by Gab-D-G over 1 year ago - 1 comment

#309 - Container todos

Issue - State: open - Opened by gdevenyi over 1 year ago - 2 comments

#308 - Requiring specific versions in setup.py

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#305 - ENHANCEMENT: Provide a complete functional pipeline usable with test data

Issue - State: open - Opened by gdevenyi over 1 year ago - 5 comments

#304 - Updates

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#303 - Coordinate nipype threads with ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS

Issue - State: open - Opened by gdevenyi over 1 year ago - 6 comments

#301 - Big rewrite of Docker config as well as environment file

Pull Request - State: closed - Opened by gdevenyi over 1 year ago - 3 comments

#300 - Group_ICA error

Issue - State: closed - Opened by nmskhan over 1 year ago - 2 comments

#296 - testing data with Rabies

Issue - State: closed - Opened by nmskhan over 1 year ago - 7 comments

#294 - RABIES fails on test data

Issue - State: closed - Opened by benhibou over 1 year ago - 2 comments

#293 - 1 bad file out of 50 subjects during preprocessing

Issue - State: closed - Opened by geowk over 1 year ago - 4 comments

#292 - Seed_list issue? Seed path doesn't exist?

Issue - State: closed - Opened by geowk over 1 year ago - 4 comments

#287 - Updates

Pull Request - State: closed - Opened by Gab-D-G over 1 year ago

#284 - ROI_csv Analysis

Issue - State: closed - Opened by sxf-ux almost 2 years ago - 4 comments

#282 - Default for image_scaling = global variance

Issue - State: closed - Opened by Francesca1990 almost 2 years ago - 3 comments

#280 - Image orientation

Issue - State: open - Opened by biancadepifanio almost 2 years ago - 1 comment

#279 - EPI2ANAT (Functional EPI issue)

Issue - State: closed - Opened by sxf-ux almost 2 years ago - 3 comments

#278 - Updates

Pull Request - State: closed - Opened by Gab-D-G almost 2 years ago

#277 - Diagnosis updates

Pull Request - State: closed - Opened by Gab-D-G almost 2 years ago

#276 - Pre-processing InhoCorrection Issue

Issue - State: closed - Opened by sxf-ux almost 2 years ago - 11 comments

#274 - Issue with preprocessing step

Issue - State: closed - Opened by sxf-ux almost 2 years ago - 1 comment

#271 - STC additions

Pull Request - State: closed - Opened by davidgruskin about 2 years ago - 1 comment

#268 - Diagnosis revision

Pull Request - State: closed - Opened by Gab-D-G about 2 years ago

#266 - Change the ROI_csv default to a proper .csv file.

Issue - State: open - Opened by Gab-D-G about 2 years ago

#264 - SimpleITK ImageFileReader_Execute error

Issue - State: closed - Opened by archang about 2 years ago - 18 comments

#261 - Update utils.py

Pull Request - State: closed - Opened by davidgruskin about 2 years ago - 1 comment

#260 - Ants update

Pull Request - State: closed - Opened by cedricBarre about 2 years ago - 3 comments

#256 - Permission issues

Issue - State: closed - Opened by KarisColyerPatel about 2 years ago - 5 comments

#255 - Include SIGMA template in RABIES for -rat preprocessing.

Issue - State: open - Opened by grandjeanlab about 2 years ago - 9 comments

#253 - Update submodules to include fixed metric gradient filter

Pull Request - State: closed - Opened by gdevenyi about 2 years ago