Cloufield/gwaslab issues and pull requests

#36 - Miami plot issue

Issue - State: open - Opened by soumickmj over 1 year ago - 8 comments

#35 - Miami plot giving error

Issue - State: closed - Opened by soumickmj over 1 year ago

#34 - Problem with expected log P in QQ plots

Issue - State: open - Opened by soumickmj over 1 year ago - 10 comments

#33 - How to save "gwaslab.Sumstats.Sumstats" object into csv/tsv file

Issue - State: closed - Opened by chenyangjjj over 1 year ago - 2 comments
Labels: documentation

#32 - Making scatter plot directly from gl object instead of going from file

Issue - State: open - Opened by michaelofrancis over 1 year ago - 2 comments
Labels: enhancement

#31 - Adding is_q=False to scatterplot introduces 'Edge_color' error

Issue - State: open - Opened by michaelofrancis over 1 year ago - 2 comments
Labels: bug

#30 - Save scatter plot

Issue - State: open - Opened by michaelofrancis over 1 year ago - 3 comments
Labels: enhancement

#29 - Regional Plot missing gene data

Issue - State: closed - Opened by XaviFar over 1 year ago - 2 comments

#28 - R2 threshold

Issue - State: closed - Opened by chenyangjjj over 1 year ago - 4 comments

#27 - Multiple sumstats ( phenotypes), single MQQ plot

Issue - State: open - Opened by soumickmj over 1 year ago - 3 comments
Labels: enhancement

#26 - m="qq" not working

Issue - State: closed - Opened by michaelofrancis over 1 year ago - 2 comments
Labels: bug

#25 - Miami plot using sumstats

Issue - State: open - Opened by soumickmj over 1 year ago - 1 comment
Labels: enhancement

#24 - Plotting multiple results in one plot

Issue - State: closed - Opened by soumickmj over 1 year ago - 2 comments

#23 - Heatmaps and other plots

Issue - State: open - Opened by soumickmj over 1 year ago - 2 comments
Labels: documentation, enhancement

#22 - Frequency correlation plot

Issue - State: open - Opened by swvanderlaan over 1 year ago - 3 comments
Labels: enhancement

#21 - Bonferroni correction

Issue - State: open - Opened by soumickmj over 1 year ago - 3 comments
Labels: enhancement

#20 - Annotate suggestive SNPs

Issue - State: closed - Opened by XaviFar over 1 year ago - 3 comments
Labels: bug

#19 - chrX Manhattan plot issue

Issue - State: closed - Opened by michaelofrancis over 1 year ago - 5 comments

#18 - getlead() cannot handle "X" as CHR value

Issue - State: closed - Opened by michaelofrancis over 1 year ago - 2 comments

#17 - New issue

Issue - State: open - Opened by Delvalle-beep almost 2 years ago - 1 comment

#16 - Miami plot with no annotation throws exception

Issue - State: closed - Opened by meredjj almost 2 years ago - 2 comments
Labels: bug

#15 - Multiple P values

Issue - State: open - Opened by Delvalle-beep almost 2 years ago - 4 comments
Labels: enhancement

#14 - Adding support for bcf?

Issue - State: open - Opened by michaelofrancis almost 2 years ago - 1 comment
Labels: enhancement

#13 - Typo in "base_pair_location" GWAS-SSF

Issue - State: closed - Opened by michaelofrancis almost 2 years ago - 1 comment

#12 - More Manhattan plot issues

Issue - State: closed - Opened by michaelofrancis almost 2 years ago - 10 comments

#11 - Can't get regional plot working when using data in build HG38

Issue - State: open - Opened by h-leonard almost 2 years ago - 1 comment

#10 - gl.download_ref(), not clear how to use it

Issue - State: open - Opened by Delvalle-beep almost 2 years ago - 5 comments

#9 - Installation problem on Windows

Issue - State: open - Opened by snowformatics almost 2 years ago - 2 comments

#8 - Display issues

Issue - State: closed - Opened by michaelofrancis almost 2 years ago - 6 comments

#7 - How to use log10P values as input for Manhattan plot?

Issue - State: closed - Opened by michaelofrancis almost 2 years ago - 2 comments

#6 - Get by chromosome