Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Cloufield/gwaslab issues and pull requests
#107 - Incorrect SSF file extension
Issue -
State: open - Opened by yassineS about 1 month ago
- 1 comment
Labels: bug
#106 - Manhattan plot issue
Issue -
State: closed - Opened by MC4R about 2 months ago
- 10 comments
Labels: bug
#105 - adjust y axis to be equal in miami plot
Issue -
State: closed - Opened by lvilarribo9 about 2 months ago
- 2 comments
#104 - liftover weird behaviour
Issue -
State: open - Opened by gmauro about 2 months ago
- 1 comment
#103 - get_lead 'boolean value of NA' issue localising to util_in_get_sig.py
Issue -
State: closed - Opened by krishnaxamin 2 months ago
- 4 comments
#102 - Making merge of figures
Issue -
State: open - Opened by migueep450 2 months ago
- 1 comment
#101 - Abf
Pull Request -
State: closed - Opened by TakeuchiYohei 3 months ago
#100 - Liftover returning only column headings
Issue -
State: closed - Opened by halkelchen 4 months ago
- 2 comments
#99 - Inquiry on QC and GWAS Pipeline
Issue -
State: open - Opened by buer19970329 4 months ago
- 6 comments
#98 - ERROR: Could not build wheels for pySAM, which is required to install pyproject.toml-based projects
Issue -
State: open - Opened by FrederickGri 4 months ago
- 7 comments
#97 - mysumstats.to_finemapping not working
Issue -
State: closed - Opened by halkelchen 4 months ago
- 5 comments
#96 - Effect Allele select in 2SMR
Issue -
State: closed - Opened by chide-org 4 months ago
- 4 comments
#95 - Question about gwas
Issue -
State: open - Opened by Youpu-Chen 4 months ago
- 1 comment
#94 - filter_value filters all data
Issue -
State: closed - Opened by lbwfff 4 months ago
- 2 comments
#93 - Installation error
Issue -
State: closed - Opened by bsb2014 5 months ago
- 10 comments
Labels: Installation
#92 - vcf_path in regional plot
Issue -
State: open - Opened by Sheeya-Dong 5 months ago
- 3 comments
#91 - Improve fix for when POS is not on ref_seq
Pull Request -
State: closed - Opened by sup3rgiu 5 months ago
- 1 comment
#90 - Issue on QQ plot visualization alone
Issue -
State: closed - Opened by Youpu-Chen 6 months ago
- 2 comments
#89 - out of memory error in basic_check()
Issue -
State: open - Opened by evakoe 6 months ago
- 4 comments
Labels: enhancement
#88 - Index out of bounds error in check_ref()
Issue -
State: open - Opened by evakoe 6 months ago
- 7 comments
Labels: bug
#87 - ImportError upon installation
Issue -
State: closed - Opened by zhaiting 6 months ago
- 8 comments
#86 - Add cache to speedup strand inference
Pull Request -
State: closed - Opened by sup3rgiu 6 months ago
- 5 comments
#85 - Fix missing logs, rename **args to **kwargs, fix typo
Pull Request -
State: closed - Opened by sup3rgiu 6 months ago
- 1 comment
#84 - error when setting anno="GENENAME"
Issue -
State: open - Opened by Sheeya-Dong 7 months ago
- 5 comments
#83 - Regional plots with LD
Issue -
State: open - Opened by xEmz 7 months ago
- 1 comment
#82 - installation
Issue -
State: open - Opened by YijiaWu1 7 months ago
- 3 comments
#81 - Fast implementation to write VCF and CSV
Pull Request -
State: closed - Opened by sup3rgiu 7 months ago
- 1 comment
#80 - Vectorize checkref
Pull Request -
State: closed - Opened by sup3rgiu 7 months ago
- 4 comments
#79 - Highlighting significant loci in the trumpet plot?
Issue -
State: open - Opened by RezaJF 7 months ago
- 1 comment
#78 - scikit-allel build issues
Issue -
State: closed - Opened by jonathangriffiths 8 months ago
- 2 comments
#77 - python version dependencies
Issue -
State: closed - Opened by chenyangjjj 8 months ago
- 1 comment
#76 - Regional plot: unable to plot variants correctly.
Issue -
State: closed - Opened by sakuramodokich 8 months ago
- 8 comments
#75 - rsID Annotation for need to be fixed
Issue -
State: closed - Opened by chenyangjjj 8 months ago
- 2 comments
#74 - https://ftp.ncbi.nih.gov/snp/latest_release/VCF/GCF_000001405.39.gz not available now
Issue -
State: closed - Opened by chenyangjjj 8 months ago
- 1 comment
#73 - Filtering based on lookupstatus() and check_af()
Issue -
State: open - Opened by swvanderlaan 10 months ago
- 4 comments
#72 - Naming convention mismatches fixed
Pull Request -
State: closed - Opened by soumickmj 10 months ago
- 2 comments
#71 - Highlighting significant loci
Issue -
State: open - Opened by soumickmj 10 months ago
- 2 comments
Labels: enhancement
#70 - arguments from manhattan don't exist in miami function
Issue -
State: open - Opened by igumnov-daniel 10 months ago
- 4 comments
Labels: enhancement
#69 - Bad statistics
Issue -
State: closed - Opened by biomguler 11 months ago
- 7 comments
Labels: bug
#68 - installation issue with 3.4.30 version
Issue -
State: open - Opened by chenyangjjj 11 months ago
- 4 comments
Labels: bug
#67 - plot_mqq() snpid problem
Issue -
State: open - Opened by poemon 11 months ago
- 1 comment
#66 - Typos
Pull Request -
State: closed - Opened by gmauro 11 months ago
#65 - seed error
Issue -
State: open - Opened by swvanderlaan 11 months ago
- 1 comment
Labels: bug
#64 - Regional plot: AttributeError: 'NoneType' object has no attribute '_get_renderer'"
Issue -
State: open - Opened by noeri-mohamed-hoesein 11 months ago
- 2 comments
#63 - rsid_to_chrpos failed
Issue -
State: closed - Opened by chenyangjjj 11 months ago
- 2 comments
#62 - error while using rsid_to_chrpos
Issue -
State: open - Opened by soumickmj 11 months ago
- 2 comments
Labels: bug
#61 - Lifting error
Issue -
State: open - Opened by soumickmj 11 months ago
- 1 comment
#60 - Error importing table to gl-format
Issue -
State: open - Opened by swvanderlaan 12 months ago
- 2 comments
#59 - miami image really huge
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 3 comments
Labels: bug
#58 - effect size comparison
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 2 comments
Labels: bug
#57 - Installation problem
Issue -
State: closed - Opened by bsb2014 about 1 year ago
- 2 comments
#56 - add extra parameters for pysam.tabix_index()
Pull Request -
State: closed - Opened by gmauro about 1 year ago
#55 - VCF export
Issue -
State: open - Opened by gmauro about 1 year ago
- 2 comments
Labels: bug
#54 - issue about mqqplot anno="GENENAME"
Issue -
State: closed - Opened by hmutanqilong about 1 year ago
- 2 comments
#53 - inferring MAF from rsid for specific population
Issue -
State: closed - Opened by chenyangjjj about 1 year ago
- 2 comments
Labels: enhancement
#52 - Resolving Pysam Errors During GWASLab Installation
Issue -
State: open - Opened by lphotoimpact about 1 year ago
- 1 comment
Labels: Installation
#51 - Assigning rsID error
Issue -
State: open - Opened by lphotoimpact about 1 year ago
- 2 comments
Labels: enhancement
#50 - Different highlight lists and colors
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 3 comments
Labels: enhancement
#49 - Error with .plot_daf() function
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 3 comments
Labels: bug
#48 - More ancestries as download option?
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 6 comments
Labels: enhancement
#47 - Could not retrieve index file
Issue -
State: closed - Opened by chenyangjjj about 1 year ago
- 14 comments
Labels: bug
#46 - coordinate conversion and infer rsid
Issue -
State: closed - Opened by chenyangjjj about 1 year ago
- 1 comment
#45 - Regional plot gene name issue
Issue -
State: open - Opened by soumickmj about 1 year ago
- 1 comment
#44 - recombination data for hg38 is in the wrong format
Issue -
State: closed - Opened by edg1983 about 1 year ago
- 2 comments
#43 - gl.plot_miami : "local variable 'to_annotate5' referenced before assignment"
Issue -
State: closed - Opened by chenyangjjj about 1 year ago
- 8 comments
Labels: bug
#42 - Manhattan plotting issue
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 5 comments
Labels: bug
#41 - Typo in `basic_check()`-log
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 1 comment
Labels: documentation
#40 - Brisbane plotting error regarding 'SNPID'
Issue -
State: closed - Opened by swvanderlaan about 1 year ago
- 2 comments
Labels: bug
#39 - regional plot
Issue -
State: closed - Opened by chenyangjjj over 1 year ago
- 3 comments
#38 - Output exceeds the [size limit]
Issue -
State: closed - Opened by chenyangjjj over 1 year ago
- 2 comments
#37 - regional plot
Issue -
State: closed - Opened by chenyangjjj over 1 year ago
- 2 comments
#36 - Miami plot issue
Issue -
State: open - Opened by soumickmj over 1 year ago
- 8 comments
#35 - Miami plot giving error
Issue -
State: closed - Opened by soumickmj over 1 year ago
#34 - Problem with expected log P in QQ plots
Issue -
State: open - Opened by soumickmj over 1 year ago
- 10 comments
#33 - How to save "gwaslab.Sumstats.Sumstats" object into csv/tsv file
Issue -
State: closed - Opened by chenyangjjj over 1 year ago
- 2 comments
Labels: documentation
#32 - Making scatter plot directly from gl object instead of going from file
Issue -
State: open - Opened by michaelofrancis over 1 year ago
- 2 comments
Labels: enhancement
#31 - Adding is_q=False to scatterplot introduces 'Edge_color' error
Issue -
State: open - Opened by michaelofrancis over 1 year ago
- 2 comments
Labels: bug
#30 - Save scatter plot
Issue -
State: open - Opened by michaelofrancis over 1 year ago
- 3 comments
Labels: enhancement
#29 - Regional Plot missing gene data
Issue -
State: closed - Opened by XaviFar over 1 year ago
- 2 comments
#28 - R2 threshold
Issue -
State: closed - Opened by chenyangjjj over 1 year ago
- 4 comments
#27 - Multiple sumstats ( phenotypes), single MQQ plot
Issue -
State: open - Opened by soumickmj over 1 year ago
- 3 comments
Labels: enhancement
#26 - m="qq" not working
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 2 comments
Labels: bug
#25 - Miami plot using sumstats
Issue -
State: open - Opened by soumickmj over 1 year ago
- 1 comment
Labels: enhancement
#24 - Plotting multiple results in one plot
Issue -
State: closed - Opened by soumickmj over 1 year ago
- 2 comments
#23 - Heatmaps and other plots
Issue -
State: open - Opened by soumickmj over 1 year ago
- 2 comments
Labels: documentation, enhancement
#22 - Frequency correlation plot
Issue -
State: open - Opened by swvanderlaan over 1 year ago
- 3 comments
Labels: enhancement
#21 - Bonferroni correction
Issue -
State: open - Opened by soumickmj over 1 year ago
- 3 comments
Labels: enhancement
#20 - Annotate suggestive SNPs
Issue -
State: closed - Opened by XaviFar over 1 year ago
- 3 comments
Labels: bug
#19 - chrX Manhattan plot issue
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 5 comments
#18 - getlead() cannot handle "X" as CHR value
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 2 comments
#17 - New issue
Issue -
State: open - Opened by Delvalle-beep over 1 year ago
- 1 comment
#16 - Miami plot with no annotation throws exception
Issue -
State: closed - Opened by meredjj over 1 year ago
- 2 comments
Labels: bug
#15 - Multiple P values
Issue -
State: open - Opened by Delvalle-beep over 1 year ago
- 4 comments
Labels: enhancement
#14 - Adding support for bcf?
Issue -
State: open - Opened by michaelofrancis over 1 year ago
- 1 comment
Labels: enhancement
#13 - Typo in "base_pair_location" GWAS-SSF
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 1 comment
#12 - More Manhattan plot issues
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 10 comments
#11 - Can't get regional plot working when using data in build HG38
Issue -
State: open - Opened by h-leonard over 1 year ago
- 1 comment
#10 - gl.download_ref(), not clear how to use it
Issue -
State: open - Opened by Delvalle-beep over 1 year ago
- 5 comments
#9 - Installation problem on Windows
Issue -
State: open - Opened by snowformatics over 1 year ago
- 2 comments
#8 - Display issues
Issue -
State: closed - Opened by michaelofrancis over 1 year ago
- 6 comments