Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Clinical-Genomics/scout issues and pull requests
#4309 - Thaw cryptography
Pull Request -
State: closed - Opened by dnil 10 months ago
- 2 comments
#4308 - Suggested changes to indices post consult session
Pull Request -
State: closed - Opened by dnil 10 months ago
- 12 comments
#4307 - Switch to bootstrap icons
Issue -
State: open - Opened by dnil 10 months ago
Labels: enhancement, Refactor, Frontend
#4306 - Code that needs checking before loading ORPHA terms
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
#4305 - Unfreeze coloredlogs
Pull Request -
State: closed - Opened by dnil 10 months ago
- 2 comments
Labels: Easy
#4304 - Phenomodels icons not visible
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: bug, Easy
#4303 - Scout view users can fail on broken entries...
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
#4302 - Fix updating unexisting user crash
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 3 comments
Labels: Easy, Bugfix
#4301 - Fix #4300 - DecimalFields stepping
Pull Request -
State: closed - Opened by dnil 10 months ago
- 4 comments
#4300 - DecimalFields do not allow input of small numbers
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: bug
#4299 - Removing the admin role from a non-existing user ends crashes the code - low prio
Issue -
State: closed - Opened by northwestwitch 10 months ago
Labels: bug
#4298 - Update genes, diseases, HPO terms etc
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: Clinical Genomics Solna instance only
#4297 - Fusion variants's form fields are not remembered after the search
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 1 comment
#4296 - Release version 4.75
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 6 comments
#4295 - Phenomizer connection down
Issue -
State: closed - Opened by dnil 10 months ago
- 10 comments
Labels: bug
#4294 - Variant page suddenly slow on main, not release branch
Issue -
State: closed - Opened by dnil 10 months ago
- 3 comments
Labels: Clinical Genomics Solna instance only
#4293 - Updated GnomAD gene constraints (v4) available
Issue -
State: closed - Opened by dnil 10 months ago
Labels: enhancement
#4292 - Fix type of some RNA fusion variant keys
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 3 comments
Labels: Easy, Bugfix
#4291 - Remove dead functions and their tests
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: Easy, QualityOfLife, Refactor
#4290 - Remove redundant variant index
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
#4289 - Alamut indel links
Pull Request -
State: closed - Opened by dnil 10 months ago
- 12 comments
Labels: Bugfix
#4288 - All types of variants contain str-specific info that is set to "None"
Issue -
State: closed - Opened by northwestwitch 10 months ago
Labels: bug
#4287 - Fix removing of None key/values before saving parsed variants
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 4 comments
Labels: Easy, Bugfix
#4286 - Gene filter for fusion vcf should work for fusion_gene names
Issue -
State: closed - Opened by fevac 10 months ago
- 9 comments
Labels: enhancement, RNA-seq
#4285 - Un-audit filter...
Issue -
State: closed - Opened by dnil 10 months ago
Labels: enhancement, QualityOfLife
#4284 - Restore changelog format
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 6 comments
Labels: Easy, QualityOfLife
#4283 - Error in case GMSB-ST173MIP
Issue -
State: closed - Opened by KickiLagerstedt 10 months ago
- 8 comments
Labels: Clinical Genomics Solna instance only
#4282 - Fix GT ref and alt depth parsing when values are 0
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 7 comments
Labels: Easy, Bugfix
#4281 - Tool hits field for a fusion variant should be an integer, not a string
Issue -
State: closed - Opened by northwestwitch 10 months ago
Labels: bug
#4280 - Structural variant in genepanel?
Issue -
State: closed - Opened by sofievonlanthen 10 months ago
- 2 comments
Labels: enhancement, Customer Request, QualityOfLife
#4279 - Fix Alamut link for MT variants in build 38
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 4 comments
Labels: Easy, Bugfix
#4278 - Update fusion filters
Pull Request -
State: closed - Opened by fevac 10 months ago
- 3 comments
#4277 - Sanger email feedback
Issue -
State: closed - Opened by sofievonlanthen 10 months ago
- 8 comments
Labels: enhancement, Customer Request, QualityOfLife
#4276 - Display 0 instead of -1 for read junctions in fusion view
Pull Request -
State: closed - Opened by fevac 10 months ago
- 4 comments
#4275 - Parse and show RNA fusion found_db key/values
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 3 comments
Labels: enhancement, Easy, Bugfix
#4274 - Fix extra chars on general report
Pull Request -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: Easy, QualityOfLife, Bugfix
#4273 - Left over chars on general report
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: bug, QualityOfLife
#4272 - Fix Junction Reads in fusion vcf
Issue -
State: closed - Opened by fevac 10 months ago
Labels: enhancement, QualityOfLife
#4271 - Add databases column fusion vcf view
Issue -
State: closed - Opened by fevac 10 months ago
- 2 comments
Labels: enhancement
#4270 - Add sorting in vcf columns
Issue -
State: closed - Opened by fevac 10 months ago
- 3 comments
Labels: wontfix
#4269 - Add additional filters for fusion vcf
Issue -
State: closed - Opened by fevac 10 months ago
Labels: enhancement
#4268 - Retrieve genes transcripts and exons using the schug library
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 4 comments
Labels: Refactor
#4267 - JSONDecodeError on case MT report
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 1 comment
Labels: bug, duplicate
#4266 - MT coverage report issue?
Issue -
State: closed - Opened by dnil 10 months ago
- 2 comments
Labels: bug
#4265 - Fix pretty_variant() function to display multiple HGVS when a pinned/causative variant contains multiple genes
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 4 comments
Labels: enhancement
#4264 - Fix #4263 - activate case when visiting FSHD or SMA reports
Pull Request -
State: closed - Opened by dnil 10 months ago
- 3 comments
#4263 - Bionano FSHD variant view should activate case
Issue -
State: closed - Opened by dnil 10 months ago
Labels: enhancement, Easy
#4262 - Add orphacodes to diseases
Pull Request -
State: closed - Opened by TereseBo 10 months ago
- 12 comments
#4261 - Give all load research a chance
Pull Request -
State: closed - Opened by dnil 10 months ago
- 3 comments
#4260 - Patch release 4.74.1
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 7 comments
#4259 - BioNanoGenomics Access 1.8 type of count fields changed?
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: bug
#4258 - Deal with failed FSHD analyses..
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: enhancement
#4257 - Tentatively fix #4256 - replace some now pro icons
Pull Request -
State: closed - Opened by dnil 10 months ago
- 3 comments
Labels: Bugfix
#4256 - Issues with viewing some icons from the hospital side...
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: bug
#4255 - Refactor: internally rename "phenotype" to "disease" when largely referring to disorders / disease ontology terms
Issue -
State: closed - Opened by dnil 10 months ago
- 1 comment
Labels: Refactor
#4254 - Improve error handling for managed variants upload
Issue -
State: closed - Opened by dnil 10 months ago
Labels: enhancement
#4253 - Show which case panels affected genes belong to in Clinical SNV and INDELs variant pages for variants that affect more than one gene
Pull Request -
State: closed - Opened by alkc 10 months ago
- 4 comments
Labels: QualityOfLife
#4252 - Fix #4250 - bionano access API getFSHD changed to GET
Pull Request -
State: closed - Opened by dnil 10 months ago
- 3 comments
Labels: Bugfix
#4251 - Scout load research to fail late
Issue -
State: closed - Opened by dnil 10 months ago
- 4 comments
Labels: enhancement
#4250 - BioNano Access API update to 1.8
Issue -
State: closed - Opened by dnil 10 months ago
Labels: bug
#4249 - "Haploblock" below centromeric regions in chromographs
Issue -
State: open - Opened by FZ73 10 months ago
- 1 comment
Labels: question, QualityOfLife
#4248 - Gens button case analysis type
Pull Request -
State: closed - Opened by dnil 10 months ago
- 3 comments
#4247 - A couple more fa icons fixed
Pull Request -
State: closed - Opened by dnil 10 months ago
- 2 comments
#4246 - Revert global styles and fix variant buttons style instead
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 3 comments
Labels: Easy
#4245 - Visited variants and cases no longer look visited
Issue -
State: closed - Opened by northwestwitch 10 months ago
#4244 - Test update fontwesome
Pull Request -
State: closed - Opened by dnil 10 months ago
- 14 comments
#4243 - Missing icons
Issue -
State: closed - Opened by northwestwitch 10 months ago
- 7 comments
Labels: bug, help wanted, Easy, Frontend
#4242 - Minor release 4.74
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 6 comments
#4241 - Add commands for downloading gene-disease relation files from Orphadata
Pull Request -
State: closed - Opened by TereseBo 10 months ago
- 2 comments
#4240 - Compound follow multi gene
Pull Request -
State: closed - Opened by dnil 10 months ago
- 2 comments
Labels: Bugfix
#4239 - Do not save custom images into database documents
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 7 comments
#4238 - How to run pytest test suite locally?
Issue -
State: closed - Opened by alkc 10 months ago
- 2 comments
Labels: question
#4237 - Small changelog fix
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
#4236 - Fix visited color of image links
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: Easy, Frontend
#4235 - Audit filters specifics on case report
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: enhancement, Easy
#4234 - Fix saving mei filters
Pull Request -
State: closed - Opened by northwestwitch 10 months ago
- 2 comments
Labels: Easy, Bugfix
#4233 - Display gene panel membership in gene summary table in /variant view for variants related to multiple genes
Issue -
State: closed - Opened by alkc 11 months ago
- 7 comments
Labels: QualityOfLife
#4232 - Compounds follow filter hiding on variants hitting multiple genes
Issue -
State: closed - Opened by dnil 11 months ago
Labels: bug
#4231 - Saving MEI research filters crash
Issue -
State: closed - Opened by dnil 11 months ago
- 2 comments
Labels: bug
#4230 - Update case document with path to mei variants
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 6 comments
#4229 - Scout update case missing MEI options
Issue -
State: closed - Opened by dnil 11 months ago
Labels: enhancement
#4228 - Re-upload misses added VCFs
Issue -
State: closed - Opened by dnil 11 months ago
- 9 comments
Labels: bug
#4227 - Use of clinical filter on research page unclear
Issue -
State: open - Opened by dnil 11 months ago
Labels: enhancement
#4225 - Fusion variant page
Issue -
State: open - Opened by dnil 11 months ago
Labels: enhancement
#4224 - Visited scout logo became pink
Issue -
State: closed - Opened by northwestwitch 11 months ago
Labels: Frontend
#4223 - Convert the diagnoses page into a diagnosis search & display page
Issue -
State: closed - Opened by northwestwitch 11 months ago
- 1 comment
Labels: enhancement, Frontend
#4222 - Add missing OMIM terms without associated genes
Pull Request -
State: closed - Opened by TereseBo 11 months ago
- 8 comments
#4221 - Add test and fixtures for RNA fusion case page
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 3 comments
Labels: Easy
#4220 - Add a owner + display name index to the case collection
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 3 comments
Labels: enhancement, Easy
#4219 - Audit clinical filter on variantS page
Issue -
State: closed - Opened by dnil 11 months ago
- 1 comment
Labels: enhancement, Customer Request
#4218 - Optionally expand comment box on variant page
Issue -
State: closed - Opened by dnil 11 months ago
Labels: enhancement, Customer Request, QualityOfLife, Frontend
#4217 - Visited links color
Pull Request -
State: closed - Opened by TereseBo 11 months ago
- 3 comments
#4216 - Improving the indexes
Issue -
State: open - Opened by northwestwitch 11 months ago
- 5 comments
Labels: enhancement
#4215 - Fix MME submissions page crashing
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 5 comments
#4214 - Broken Matchmaker submission page
Issue -
State: closed - Opened by northwestwitch 11 months ago
Labels: bug
#4213 - Option to submit multigene SNVs as single genes to MME
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 2 comments
Labels: Customer Request
#4212 - Added Decipher button to SNV/MEI and str variant page
Pull Request -
State: closed - Opened by northwestwitch 11 months ago
- 2 comments
Labels: Customer Request, Easy
#4211 - External links on SNV page look weird
Issue -
State: closed - Opened by northwestwitch 11 months ago
- 7 comments
Labels: Easy, Frontend
#4210 - Suggestion of added External Links for variants pages (Clinical SNV and INDELs).
Issue -
State: open - Opened by TJO-Lund 11 months ago
- 2 comments
Labels: enhancement, Easy
#4209 - Show all "Inactive cases" respectively "Active cases" on the Cases-page for each Institute in Scout
Issue -
State: closed - Opened by TJO-Lund 11 months ago
- 3 comments
Labels: enhancement, QualityOfLife