Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / Clinical-Genomics/scout issues and pull requests
#4827 - MIssing cases
Issue -
State: open - Opened by sofievonlanthen about 1 month ago
- 12 comments
Labels: Clinical Genomics Solna instance only
#4826 - Display WTS outliers again
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 12 comments
#4825 - GT check excludes all variants from the WTS outliers page
Issue -
State: closed - Opened by northwestwitch about 1 month ago
Labels: bug
#4824 - Minor release 4.88
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 5 comments
#4823 - Compound top 20 does not show correct order, and shows "not loaded"
Issue -
State: closed - Opened by Jakob37 about 1 month ago
- 15 comments
Labels: Lund
#4822 - Show SNV/indels in SMN genes on the SMN CN page
Issue -
State: open - Opened by Jakob37 about 1 month ago
- 2 comments
Labels: enhancement, Under discussion
#4821 - SMN CN page comment field for variant instead of using full case comment field
Issue -
State: open - Opened by Jakob37 about 1 month ago
- 1 comment
Labels: enhancement, Under discussion, blocked
#4820 - SMN CN page pin button
Issue -
State: open - Opened by Jakob37 about 1 month ago
- 3 comments
Labels: enhancement, Under discussion
#4819 - test revert igv.js to v2
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 7 comments
#4818 - IGV hangs while loading sample tracks
Issue -
State: closed - Opened by northwestwitch about 1 month ago
- 4 comments
Labels: bug, wontfix
#4816 - Refactor RNA handling
Issue -
State: closed - Opened by dnil about 1 month ago
#4815 - Fix #4814 - actually use variant sample in displaying omics variants
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 9 comments
#4814 - Individual with omics variants arbitrarily set as first individual of the case
Issue -
State: closed - Opened by northwestwitch about 1 month ago
Labels: bug
#4813 - Patch version 4.87.2
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 3 comments
#4812 - Show CoLoRSdb freq in Pop Freq cell on variantS page
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 3 comments
Labels: Easy
#4811 - Fix coverage upload
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 2 comments
#4810 - design principles, extensions
Issue -
State: closed - Opened by parlar about 1 month ago
- 4 comments
Labels: question
#4809 - Upload coverage step in GitHub actions seems broken
Issue -
State: closed - Opened by northwestwitch about 1 month ago
- 6 comments
Labels: bug
#4808 - Selective case update
Issue -
State: open - Opened by dnil about 1 month ago
Labels: enhancement, Intermediate, RNA-seq
#4807 - Invalid tag names in VCF: prod & demo
Issue -
State: open - Opened by dnil about 1 month ago
#4806 - Fix setup database command
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 4 comments
Labels: Easy, Bugfix
#4803 - Partially fix #4802 - update demo VCF header with missing keys
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 6 comments
#4802 - setup problems, hgnc_genes
Issue -
State: closed - Opened by parlar about 1 month ago
- 7 comments
Labels: bug
#4801 - Rename camel case columns
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 7 comments
#4800 - DROP TSV header - a few more headings camel case
Issue -
State: closed - Opened by dnil about 1 month ago
#4799 - Update case omics files
Pull Request -
State: open - Opened by dnil about 1 month ago
- 4 comments
Labels: enhancement
#4798 - third-party interpretation tool integration
Issue -
State: closed - Opened by parlar about 1 month ago
- 7 comments
Labels: Under discussion
#4797 - Update case command options for omics_files
Issue -
State: open - Opened by dnil about 1 month ago
Labels: enhancement
#4796 - WTS outlier genes flagged on SNV-SV-variantS view
Issue -
State: open - Opened by dnil about 1 month ago
Labels: enhancement, QualityOfLife, RNA-seq
#4794 - Colorsdb on variantS pop freq tooltip?
Issue -
State: closed - Opened by dnil about 1 month ago
Labels: enhancement, QualityOfLife, LRS
#4793 - Patch 4.87.1 - fix genes cell on variantS page
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 3 comments
#4792 - Ugliness on variantS list: multiple gene names get squished together, and overflow to nearby column
Issue -
State: closed - Opened by dnil about 1 month ago
- 8 comments
Labels: bug
#4791 - Fix #4790 - trailing comma
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 2 comments
#4790 - js array issue on splice junction track view (release candidate bug)
Issue -
State: closed - Opened by dnil about 1 month ago
#4789 - Coloring alignments by base modification removes read grouping
Issue -
State: open - Opened by fellen31 about 1 month ago
- 9 comments
Labels: enhancement, QualityOfLife, blocked
#4788 - Show genes track also when RNA alignments are present without splice junctions tracks
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 2 comments
#4787 - Unscrollable splice junctions track
Issue -
State: closed - Opened by northwestwitch about 1 month ago
- 6 comments
#4786 - Update igv.js to 3.0.4.
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 3 comments
Labels: enhancement, Easy
#4785 - Version 4.87 - configure RNA build, add igv.js genome aliases
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 11 comments
#4784 - Fix #4782 - explicit igv.js chr alias option
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 2 comments
Labels: Easy, Bugfix
#4783 - Fix #4782 - IGV does not remove chr str from non-autosomes
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 8 comments
Labels: Bugfix
#4782 - Issues to access IGV from variant page
Issue -
State: closed - Opened by sofievonlanthen about 1 month ago
- 4 comments
#4781 - Fix #4780 - RNA aln genome build tooltips
Pull Request -
State: closed - Opened by dnil about 1 month ago
- 3 comments
#4780 - Change only in hg38 RNA tooltip
Issue -
State: closed - Opened by dnil about 1 month ago
Labels: enhancement, QualityOfLife
#4779 - Fix style of SNVs and SVs buttons on WTS Outliers page
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 2 comments
Labels: Easy, Frontend
#4778 - Patch release v.4.86.1
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 3 comments
#4777 - Fix panelapp updating error
Pull Request -
State: closed - Opened by northwestwitch about 1 month ago
- 4 comments
Labels: Easy, Bugfix
#4776 - Missing key error when updating PanelApp green Panel
Issue -
State: closed - Opened by northwestwitch about 1 month ago
- 1 comment
Labels: bug
#4775 - Fix #4773 - separate RNA view genome build option
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 2 comments
#4774 - Respect igv tracks settings
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
#4773 - RNA view hg19 aln
Issue -
State: closed - Opened by dnil about 2 months ago
- 1 comment
Labels: enhancement, RNA-seq, Research
#4772 - Fix #4769 - users can disable gene track and still see sashimi view
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 3 comments
#4771 - OMICS variant SNV, SV button center column alignment
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: enhancement, QualityOfLife, Frontend
#4770 - Settings DNA does not respect disabling certain tracks.
Issue -
State: closed - Opened by dnil about 2 months ago
- 1 comment
Labels: bug
#4769 - Splice junction track needs gene track enabled, otw does not show junctions.
Issue -
State: closed - Opened by dnil about 2 months ago
- 2 comments
Labels: bug
#4768 - Fix #4764 - timestamp activity
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 3 comments
#4767 - Show time (hours and minutes) additionally to date on comments and activity panel
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 5 comments
Labels: Easy, QualityOfLife
#4766 - Re-style case HPO terms to have one phenotype per line
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 10 comments
Labels: Customer Request, Easy
#4765 - Don't linebreak between phenotype checkbox and label. Add select all phenotypes button.
Issue -
State: closed - Opened by dnil about 2 months ago
- 2 comments
Labels: enhancement, Customer Request
#4764 - Show hh:mm timestamp on activity log
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: QualityOfLife
#4763 - Expand institute view to include stats on type of cases
Issue -
State: open - Opened by northwestwitch about 2 months ago
Labels: enhancement, QualityOfLife
#4762 - Switch to non-kit FontAwesome 6
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
#4761 - Revert table style and remove font awesome from IGV template
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 2 comments
#4760 - One more attempt at improving legibility of gene symbol flash messages
Issue -
State: open - Opened by dnil about 2 months ago
Labels: Customer Request, Intermediate, QualityOfLife
#4759 - FontAwesome bundle incorrect again
Issue -
State: closed - Opened by dnil about 2 months ago
#4758 - Add user sending requests to log
Issue -
State: open - Opened by Vince-janv about 2 months ago
Labels: enhancement
#4757 - Connectivity to gene matcher seems limited atm?
Issue -
State: open - Opened by dnil about 2 months ago
- 2 comments
Labels: bug
#4756 - Update flash message for MatchMaker to reflect new modal
Issue -
State: open - Opened by dnil about 2 months ago
Labels: enhancement, Easy
#4755 - Error sending data to patientMatcher
Issue -
State: closed - Opened by northwestwitch about 2 months ago
- 1 comment
#4754 - Download -omics variants
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 2 comments
#4753 - Add more IGV tracks to the splice junctions browser?
Issue -
State: open - Opened by northwestwitch about 2 months ago
Labels: enhancement, Under discussion
#4752 - Minor version 4.86
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 11 comments
#4751 - Update tornado to address open redirect security issue
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
Labels: Easy
#4750 - New HPO release 2024-08-13
Issue -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
Labels: Task, blocked
#4749 - Fix ExAC links
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 2 comments
Labels: Easy, Bugfix
#4748 - Links to ExAC are no longer valid
Issue -
State: closed - Opened by northwestwitch about 2 months ago
Labels: bug
#4747 - Parse and show CoLoRSdb frequencies
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 4 comments
Labels: Easy
#4746 - Parse gnomad keys from variants annotated with echtvar
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
Labels: Easy
#4745 - Load less mei variants in scout demo instance
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 3 comments
Labels: Easy, QualityOfLife
#4744 - Case tags dashboard
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 3 comments
#4743 - Dashboard stats for case tags
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: enhancement
#4742 - Add CoLoRSdb and gnomAD keys
Issue -
State: closed - Opened by fellen31 about 2 months ago
- 9 comments
Labels: enhancement, LRS
#4741 - Update Chart.js to v4.4.3
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 4 comments
#4740 - UpdateChart.js
Issue -
State: closed - Opened by dnil about 2 months ago
- 1 comment
#4739 - Fix #4738 - IGV sashimi routing hint
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 2 comments
#4738 - IGV RNA junction track variant locus zoom not working
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: bug
#4737 - Occasional crashes when testing IGV junction tracks
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: bug
#4736 - Update wokeignore to avoid unfixable warning
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 2 comments
Labels: Easy, QualityOfLife
#4735 - Fix #4734 - spliceJunction height offset
Pull Request -
State: closed - Opened by dnil about 2 months ago
- 2 comments
#4734 - Height offsets for merged RNA tracks with IGV 3.0.1
Issue -
State: closed - Opened by dnil about 2 months ago
Labels: bug
#4733 - Clickable COSMIC IGV tracks
Pull Request -
State: closed - Opened by northwestwitch about 2 months ago
- 5 comments
Labels: enhancement, QualityOfLife
#4732 - MEI loading is slow in tests
Issue -
State: closed - Opened by dnil 2 months ago
Labels: QualityOfLife, Refactor
#4731 - Fix #4729 - check caller keys also from FOUND_IN and SVDB_ORIGIN before adding
Pull Request -
State: closed - Opened by dnil 2 months ago
- 2 comments
#4730 - Sort IGV tracks - fix #4726
Pull Request -
State: closed - Opened by dnil 2 months ago
- 2 comments
Labels: Easy, Frontend
#4729 - Nonsensical key/value in demo instance variant
Issue -
State: closed - Opened by northwestwitch 2 months ago
- 7 comments
Labels: bug
#4728 - Make IGV tracks's items clickable
Issue -
State: closed - Opened by northwestwitch 2 months ago
- 1 comment
Labels: enhancement, Frontend
#4727 - Audit buttons for pages without filters
Issue -
State: open - Opened by dnil 2 months ago
Labels: enhancement, QualityOfLife
#4726 - Sort selectable IGV tracks alphabetically
Issue -
State: closed - Opened by northwestwitch 2 months ago
Labels: Easy, Frontend
#4725 - IGH@ gene symbol is not aliased to the IGH gene when loading variants
Issue -
State: closed - Opened by northwestwitch 2 months ago
- 1 comment
#4724 - Update igv.js to v 3.0.1
Pull Request -
State: closed - Opened by northwestwitch 2 months ago
- 8 comments
Labels: Easy