Ecosyste.ms: Issues

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GitHub / Clinical-Genomics/loqusdb issues and pull requests

#44 - Create VCF export of structural variants

Issue - State: closed - Opened by moonso over 6 years ago

#43 - Freeze cyvcf2 to latest known compatible version

Issue - State: closed - Opened by patrikgrenfeldt over 6 years ago - 1 comment

#42 - release 1.0 logs wrong connection string

Issue - State: closed - Opened by ingkebil over 6 years ago - 4 comments

#41 - Expand documentation

Issue - State: open - Opened by moonso over 6 years ago - 1 comment

#40 - fixed the end_chromosome problem

Pull Request - State: closed - Opened by J35P312 over 6 years ago - 4 comments

#39 - --end-chromosome is not used

Issue - State: closed - Opened by J35P312 over 6 years ago - 1 comment

#38 - Add sv

Pull Request - State: closed - Opened by J35P312 over 6 years ago

#37 - Sort positions when storing/querying bnd

Issue - State: closed - Opened by J35P312 over 6 years ago - 3 comments

#36 - frequency annotation of a vcf file

Issue - State: closed - Opened by J35P312 almost 7 years ago - 2 comments

#35 - Import Database

Issue - State: open - Opened by J35P312 almost 7 years ago - 4 comments

#34 - Allow interval size to be a parameter

Issue - State: open - Opened by moonso about 7 years ago

#33 - Add sv

Pull Request - State: closed - Opened by moonso about 7 years ago

#32 - Migrate

Pull Request - State: closed - Opened by moonso over 7 years ago

#31 - Ensure indexes

Pull Request - State: closed - Opened by moonso over 7 years ago

#30 - Export VCF breaks with python 3.x

Issue - State: closed - Opened by moonso over 7 years ago

#29 - Use genome build

Issue - State: closed - Opened by moonso over 7 years ago - 1 comment

#28 - Ensure index

Issue - State: closed - Opened by moonso over 7 years ago

#27 - Use cyvcf2

Pull Request - State: closed - Opened by moonso over 7 years ago

#26 - All variants in a specific gene(coordinates)

Issue - State: closed - Opened by moonso over 7 years ago

#25 - Python 3 encoding issue

Issue - State: closed - Opened by robinandeer over 7 years ago - 1 comment

#24 - Fix vcf header fileformat string

Pull Request - State: closed - Opened by henrikstranneheim over 7 years ago

#23 - avoid logging password

Issue - State: closed - Opened by robinandeer almost 8 years ago - 1 comment

#22 - Added test to check if vcf is on correct format before loading

Pull Request - State: closed - Opened by moonso about 8 years ago

#21 - Prints Exceptions without using exception.message. Fix #18

Pull Request - State: closed - Opened by moonso about 8 years ago

#20 - same family added twice? :/

Issue - State: closed - Opened by robinandeer about 8 years ago - 3 comments

#16 - Skip cyvcf2

Pull Request - State: closed - Opened by moonso about 8 years ago

#14 - Adds option to skip family id on variants

Pull Request - State: closed - Opened by moonso over 8 years ago