Clinical-Genomics/genotype issues and pull requests

#73 - fix broken master

Pull Request - State: open - Opened by henrikstranneheim 12 months ago - 1 comment
Labels: bug, dependencies

#72 - Fix tests

Pull Request - State: closed - Opened by henrikstranneheim 12 months ago - 1 comment

#71 - Update linting

Pull Request - State: closed - Opened by henrikstranneheim 12 months ago - 1 comment

#70 - feat(codeowner)

Pull Request - State: closed - Opened by henrikstranneheim 12 months ago - 1 comment

#69 - Not matching CG sequencing no-call (unknown) variants with MAF results

Issue - State: open - Opened by SofiaOtero over 1 year ago - 9 comments
Labels: bug

#68 - Bug(incorrect matching of data)

Issue - State: closed - Opened by karlnyr almost 2 years ago - 1 comment
Labels: bug

#67 - Bump flask from 1.1.1 to 2.3.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#64 - Added a check for user-defined sample_id before logging it.

Pull Request - State: closed - Opened by ChrOertlin about 2 years ago - 3 comments

#63 - Allow support for samples with multiple SNP allele variants

Issue - State: open - Opened by ChrOertlin about 2 years ago

#62 - Improved error message for multiple SNP variants found in fetch_snp

Pull Request - State: closed - Opened by ChrOertlin about 2 years ago - 4 comments
Labels: enhancement

#61 - Update error output to be more specific in the case of multiple SNPs variants

Issue - State: closed - Opened by Karl-Svard about 2 years ago

#60 - feat(update): GitHub actions version

Pull Request - State: closed - Opened by henrikstranneheim about 2 years ago - 2 comments

#59 - Update DEPLOYMENT.md

Pull Request - State: closed - Opened by henrikstranneheim about 2 years ago - 2 comments

#58 - Bump numpy from 1.19.2 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#57 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#56 - Update DEPLOYMENT.md

Pull Request - State: closed - Opened by henrikstranneheim over 2 years ago - 4 comments

#54 - Feat(CLI): List and inactivate users

Pull Request - State: closed - Opened by patrikgrenfeldt about 3 years ago - 2 comments

#52 - Version

Pull Request - State: closed - Opened by Mropat over 3 years ago - 1 comment

#51 - Cgvm preparations

Pull Request - State: closed - Opened by Mropat over 3 years ago - 1 comment

#50 - Updates deployment instructions for deployment with CG

Pull Request - State: closed - Opened by moonso over 4 years ago - 2 comments

#49 - Create a REST api

Issue - State: open - Opened by moonso over 4 years ago

#48 - Add support for checking all samples on a plate from UI

Issue - State: open - Opened by moonso over 4 years ago

#47 - Remove MIP parsing support and update test env

Pull Request - State: closed - Opened by moonso over 4 years ago - 1 comment

#46 - Add support for analysing all samples in a Plate from CLI

Issue - State: open - Opened by moonso over 4 years ago

#45 - Add Plate support when uploading from CLI

Issue - State: open - Opened by moonso over 4 years ago

#44 - Remove support for parsing old MIP files

Issue - State: open - Opened by moonso over 4 years ago

#43 - Match should exit gracefully

Issue - State: open - Opened by moonso over 4 years ago

#42 - genotype is built around deprecated packages

Issue - State: open - Opened by moonso over 4 years ago

#41 - move to mkdocs

Pull Request - State: closed - Opened by moonso over 4 years ago - 1 comment

#40 - Switch to github actions

Pull Request - State: closed - Opened by moonso over 4 years ago - 1 comment

#39 - Move CLI code

Pull Request - State: closed - Opened by moonso over 4 years ago - 2 comments

#38 - move CI reqs to CI config

Pull Request - State: closed - Opened by patrikgrenfeldt over 4 years ago - 2 comments

#37 - Update pip for clinical-db in .travis.yml

Pull Request - State: closed - Opened by patrikgrenfeldt almost 5 years ago - 2 comments

#36 - Installation should work on Clinical-db

Issue - State: closed - Opened by patrikgrenfeldt almost 5 years ago - 1 comment
Labels: bug

#35 - New lib path

Pull Request - State: closed - Opened by mayabrandi almost 5 years ago

#34 - Pr template

Pull Request - State: closed - Opened by mayabrandi almost 5 years ago - 1 comment

#33 - Bugfix

Pull Request - State: closed - Opened by mayabrandi about 5 years ago - 4 comments

#32 - Add jobs to CI build

Pull Request - State: closed - Opened by patrikgrenfeldt about 5 years ago - 2 comments

#31 - cleaning up

Pull Request - State: closed - Opened by mayabrandi about 5 years ago

#30 - Trending dev

Pull Request - State: closed - Opened by mayabrandi about 5 years ago - 3 comments

#29 - handle alleles separated by '|' in MIP7

Pull Request - State: closed - Opened by patrikgrenfeldt over 5 years ago - 1 comment

#28 - Trending

Pull Request - State: closed - Opened by mayabrandi over 5 years ago - 24 comments

#27 - Changed oauth scope

Pull Request - State: closed - Opened by patrikgrenfeldt over 5 years ago

#26 - Brings genotype uptospeed

Pull Request - State: closed - Opened by patrikgrenfeldt almost 6 years ago

#25 - Force analysis upload option

Issue - State: closed - Opened by northwestwitch over 6 years ago - 3 comments

#24 - fixing app requirements for python 3.6

Pull Request - State: closed - Opened by northwestwitch over 6 years ago - 1 comment

#23 - Error while launching the server with "genotype serve"

Issue - State: closed - Opened by northwestwitch over 6 years ago - 5 comments

#22 - No housekeeper

Pull Request - State: closed - Opened by robinandeer over 7 years ago

#21 - add plates table to link analyses

Pull Request - State: closed - Opened by robinandeer about 8 years ago

#20 - Add option to flag a plate as complete

Issue - State: closed - Opened by robinandeer about 8 years ago - 1 comment

#19 - compare two vcf files

Issue - State: closed - Opened by silvius76 over 8 years ago - 1 comment

#18 - swtich to cyvcf2 to add tabix support

Pull Request - State: closed - Opened by robinandeer over 8 years ago

#17 - V2

Pull Request - State: closed - Opened by robinandeer over 8 years ago